Variant report

Variant	rs10821075
Chromosome Location	chr9:95896099-95896100
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:17)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:95870960..95873239-chr9:95894940..95897821,4	MCF-7	breast:
2	chr9:95895042..95899051-chr9:95945154..95949540,5	MCF-7	breast:
3	chr9:95818120..95822805-chr9:95894646..95898384,4	K562	blood:
4	chr15:96874474..96876437-chr9:95895214..95896846,2	MCF-7	breast:
5	chr9:95525332..95528852-chr9:95893539..95896445,3	MCF-7	breast:
6	chr9:95893830..95897202-chr9:96212872..96217148,4	MCF-7	breast:
7	chr9:95856253..95862485-chr9:95892353..95899486,12	MCF-7	breast:
8	chr9:95733025..95737240-chr9:95894074..95898257,5	MCF-7	breast:
9	chr9:95895341..95897817-chr9:99179220..99181040,2	MCF-7	breast:
10	chr9:95895047..95897771-chr9:96069097..96071737,2	MCF-7	breast:
11	chr9:95895154..95898000-chr9:96338001..96340609,3	MCF-7	breast:
12	chr9:95819594..95823966-chr9:95894549..95897415,5	MCF-7	breast:
13	chr9:95894765..95898074-chr9:96066261..96068998,4	MCF-7	breast:
14	chr9:95894803..95898160-chr9:96337820..96340366,3	MCF-7	breast:
15	chr9:95894917..95896473-chr9:96212218..96213888,2	MCF-7	breast:
16	chr9:95895534..95897628-chr9:96214404..96216660,2	MCF-7	breast:
17	chr9:95855662..95862507-chr9:95894736..95899302,16	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000127084	Chromatin interaction
ENSG00000165238	Chromatin interaction
ENSG00000197724	Chromatin interaction
ENSG00000165233	Chromatin interaction
ENSG00000157303	Chromatin interaction
ENSG00000188938	Chromatin interaction
ENSG00000185963	Chromatin interaction
ENSG00000223446	Chromatin interaction
ENSG00000048828	Chromatin interaction
ENSG00000185551	Chromatin interaction
ENSG00000165244	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10761194	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10761195	0.85[CHB][hapmap]
rs10821074	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821076	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12342201	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13287380	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1833035	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2398827	0.80[CHB][hapmap]
rs34881469	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35836942	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4743894	0.80[CHB][hapmap]
rs4744178	0.88[ASN][1000 genomes]
rs7039090	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7042420	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7043145	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526296	chr9:95708192-96030392	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv1035230	chr9:95770249-95934982	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	esv1824329	chr9:95811604-95921347	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv893579	chr9:95855100-95923091	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
6	nsv893580	chr9:95855100-96099377	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
7	nsv893581	chr9:95872216-95930334	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
8	nsv614879	chr9:95883363-95897564	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
9	nsv824982	chr9:95895045-95897753	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95890400-95896600	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
2	chr9:95893000-95896200	Flanking Active TSS	Adipose Nuclei	Adipose
3	chr9:95893800-95896400	Flanking Active TSS	Primary B cells from cord blood	blood
4	chr9:95894800-95897200	Active TSS	Aorta	Aorta
5	chr9:95895000-95896200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
6	chr9:95895000-95896200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr9:95895000-95896400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr9:95895000-95897200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr9:95895000-95897400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
10	chr9:95895200-95896200	Flanking Active TSS	Primary hematopoietic stem cells	blood
11	chr9:95895200-95896200	Flanking Active TSS	NH-A	brain
12	chr9:95895200-95897000	Active TSS	ES-I3 Cell Line	embryonic stem cell
13	chr9:95895200-95897200	Active TSS	Pancreatic Islets	Pancreatic Islet
14	chr9:95895400-95896800	Active TSS	Fetal Brain Female	brain
15	chr9:95895400-95897000	Active TSS	H9 Cell Line	embryonic stem cell
16	chr9:95895400-95897000	Active TSS	iPS-15b Cell Line	embryonic stem cell
17	chr9:95895400-95897000	Active TSS	Right Atrium	heart
18	chr9:95895400-95897200	Active TSS	Fetal Kidney	kidney
19	chr9:95895600-95896200	Flanking Active TSS	NHEK	skin
20	chr9:95895600-95896600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr9:95895600-95896800	Active TSS	Duodenum Smooth Muscle	Duodenum
22	chr9:95895600-95896800	Active TSS	Sigmoid Colon	Sigmoid Colon
23	chr9:95895600-95897000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
24	chr9:95895600-95897000	Active TSS	Primary T helper naive cells from peripheral blood	blood
25	chr9:95895600-95897000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr9:95895600-95897000	Active TSS	Colon Smooth Muscle	Colon
27	chr9:95895600-95897000	Active TSS	Ovary	ovary
28	chr9:95895600-95897000	Active TSS	A549	lung
29	chr9:95895600-95897200	Active TSS	Gastric	stomach
30	chr9:95895800-95896400	Transcr. at gene 5' and 3'	Primary T helper naive cells fromperipheralblood	blood
31	chr9:95895800-95896800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr9:95895800-95896800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr9:95895800-95896800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr9:95895800-95896800	Active TSS	iPS-20b Cell Line	embryonic stem cell
35	chr9:95895800-95896800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
36	chr9:95895800-95896800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr9:95895800-95896800	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
38	chr9:95895800-95896800	Active TSS	Liver	Liver
39	chr9:95895800-95896800	Active TSS	Brain Anterior Caudate	brain
40	chr9:95895800-95896800	Active TSS	Brain Inferior Temporal Lobe	brain
41	chr9:95895800-95896800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
42	chr9:95895800-95896800	Active TSS	Esophagus	oesophagus
43	chr9:95895800-95896800	Active TSS	Fetal Intestine Small	intestine
44	chr9:95895800-95896800	Active TSS	Right Ventricle	heart
45	chr9:95895800-95896800	Active TSS	Small Intestine	intestine
46	chr9:95895800-95896800	Active TSS	Monocytes-CD14+_RO01746	blood
47	chr9:95895800-95897000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr9:95895800-95897000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr9:95895800-95897000	Active TSS	HUES6 Cell Line	embryonic stem cell
50	chr9:95895800-95897000	Active TSS	HUES64 Cell Line	embryonic stem cell

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