Variant report

Variant	rs10821094
Chromosome Location	chr9:95998990-95998991
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95992848..95994419-chr9:95997812..96000158,2	MCF-7	breast:
2	chr9:95993583..95995439-chr9:95997660..95999567,2	MCF-7	breast:
3	chr9:95989727..95992528-chr9:95997784..96000690,3	MCF-7	breast:
4	chr9:95984628..95986573-chr9:95997782..95999959,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10761201	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10761204	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10761205	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10761209	0.81[EUR][1000 genomes]
rs10821096	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10821097	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10821099	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10821100	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10821101	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10821105	0.84[EUR][1000 genomes]
rs10821106	0.83[EUR][1000 genomes]
rs10992689	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10992697	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1110335	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2012744	0.83[EUR][1000 genomes]
rs41278286	0.84[EUR][1000 genomes]
rs4743905	0.86[EUR][1000 genomes]
rs4744207	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4744208	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526296	chr9:95708192-96030392	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv893580	chr9:95855100-96099377	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv430082	chr9:95905745-96095045	Genic enhancers Enhancers Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv893582	chr9:95963114-96116937	Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv893583	chr9:95996573-96091688	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95986200-96006800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr9:95987200-96000200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr9:95987400-96001000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr9:95987400-96005200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr9:95988200-96006800	Weak transcription	Esophagus	oesophagus
6	chr9:95988400-95999800	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr9:95992200-95999800	Weak transcription	Colon Smooth Muscle	Colon
8	chr9:95993600-96005000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr9:95993800-96001800	Weak transcription	Spleen	Spleen
10	chr9:95994000-96001000	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr9:95995200-96000600	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr9:95995200-96026400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr9:95995600-96030600	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr9:95996200-95999200	Enhancers	Stomach Mucosa	stomach
15	chr9:95996200-95999400	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr9:95996200-96001200	Genic enhancers	Rectal Mucosa Donor 31	rectum
17	chr9:95996400-95999000	Enhancers	Fetal Muscle Leg	muscle
18	chr9:95996400-95999200	Genic enhancers	Duodenum Mucosa	Duodenum
19	chr9:95996400-95999400	Enhancers	Placenta	Placenta
20	chr9:95996400-96004400	Strong transcription	Fetal Brain Female	brain
21	chr9:95996400-96011200	Strong transcription	Stomach Smooth Muscle	stomach
22	chr9:95996600-95999400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
23	chr9:95996800-95999200	Genic enhancers	Colonic Mucosa	Colon
24	chr9:95996800-95999600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr9:95997000-95999000	Bivalent Enhancer	Fetal Stomach	stomach
26	chr9:95997000-95999000	Genic enhancers	Sigmoid Colon	Sigmoid Colon
27	chr9:95997000-95999200	Genic enhancers	Right Ventricle	heart
28	chr9:95997000-96001800	Strong transcription	HepG2	liver
29	chr9:95997000-96012400	Weak transcription	Fetal Kidney	kidney
30	chr9:95997400-95999800	Enhancers	Fetal Heart	heart
31	chr9:95997600-95999200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr9:95997600-96002000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr9:95997600-96007000	Weak transcription	Psoas Muscle	Psoas
34	chr9:95997600-96012400	Weak transcription	Fetal Brain Male	brain
35	chr9:95997800-95999200	Genic enhancers	Gastric	stomach
36	chr9:95997800-96000600	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr9:95997800-96002400	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
38	chr9:95998000-95999200	Genic enhancers	Pancreas	Pancrea
39	chr9:95998200-95999200	Strong transcription	Brain Germinal Matrix	brain
40	chr9:95998200-96002000	Weak transcription	Brain Cingulate Gyrus	brain
41	chr9:95998200-96003000	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr9:95998200-96005800	Weak transcription	Rectal Smooth Muscle	rectum
43	chr9:95998200-96007200	Weak transcription	Brain Angular Gyrus	brain
44	chr9:95998400-95999600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
45	chr9:95998400-96000400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr9:95998400-96000600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr9:95998400-96002200	Weak transcription	Brain Anterior Caudate	brain
48	chr9:95998400-96006400	Strong transcription	Fetal Intestine Large	intestine
49	chr9:95998400-96007000	Weak transcription	Brain Hippocampus Middle	brain
50	chr9:95998400-96007000	Weak transcription	Brain Inferior Temporal Lobe	brain

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