Variant report

Variant	rs10821096
Chromosome Location	chr9:96007602-96007603
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96006890..96010623-chr9:96016946..96019485,3	MCF-7	breast:
2	chr9:96005639..96009586-chr9:96012508..96016680,4	MCF-7	breast:
3	chr9:96000225..96002593-chr9:96006537..96008599,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165238	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10761201	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10761204	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10761205	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10761209	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10821094	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10821097	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10821099	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10821100	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10821101	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10821105	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10821106	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10992689	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992697	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10992704	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1110335	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12684394	0.84[EUR][1000 genomes]
rs1463544	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2012744	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2086103	0.84[EUR][1000 genomes]
rs3763634	0.84[EUR][1000 genomes]
rs3793546	0.82[EUR][1000 genomes]
rs41278286	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4743905	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4744203	0.85[EUR][1000 genomes]
rs4744207	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4744208	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4744215	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526296	chr9:95708192-96030392	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv893580	chr9:95855100-96099377	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv430082	chr9:95905745-96095045	Genic enhancers Enhancers Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv893582	chr9:95963114-96116937	Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv893583	chr9:95996573-96091688	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv893584	chr9:96002983-96116937	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95995200-96026400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr9:95995600-96030600	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr9:95996400-96011200	Strong transcription	Stomach Smooth Muscle	stomach
4	chr9:95997000-96012400	Weak transcription	Fetal Kidney	kidney
5	chr9:95997600-96012400	Weak transcription	Fetal Brain Male	brain
6	chr9:96000600-96010400	Weak transcription	Fetal Thymus	thymus
7	chr9:96001800-96018800	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr9:96002400-96009400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr9:96002400-96010600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr9:96002600-96016400	Weak transcription	Brain Cingulate Gyrus	brain
11	chr9:96003600-96010600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr9:96003800-96010600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr9:96005000-96010600	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr9:96005400-96033800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr9:96005600-96010400	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr9:96005600-96026200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr9:96005800-96008800	Enhancers	Placenta	Placenta
18	chr9:96005800-96010600	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr9:96005800-96010600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr9:96006200-96010600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr9:96006200-96015200	Weak transcription	Rectal Smooth Muscle	rectum
22	chr9:96006200-96043800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr9:96006400-96008000	Genic enhancers	Fetal Intestine Large	intestine
24	chr9:96006400-96008200	Enhancers	Pancreas	Pancrea
25	chr9:96006400-96008200	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr9:96006400-96008600	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr9:96006600-96007800	Weak transcription	Fetal Brain Female	brain
28	chr9:96006600-96008000	Genic enhancers	Fetal Intestine Small	intestine
29	chr9:96006600-96008400	Enhancers	Gastric	stomach
30	chr9:96006600-96014600	Weak transcription	Colon Smooth Muscle	Colon
31	chr9:96006800-96007800	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr9:96006800-96008000	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr9:96006800-96008200	Enhancers	Right Atrium	heart
34	chr9:96006800-96008400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr9:96006800-96008400	Enhancers	Esophagus	oesophagus
36	chr9:96006800-96008800	Enhancers	Left Ventricle	heart
37	chr9:96006800-96009000	Strong transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr9:96007000-96007800	Enhancers	Brain Hippocampus Middle	brain
39	chr9:96007000-96007800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
40	chr9:96007000-96007800	Genic enhancers	HepG2	liver
41	chr9:96007000-96008200	Enhancers	Brain Inferior Temporal Lobe	brain
42	chr9:96007000-96008400	Enhancers	Psoas Muscle	Psoas
43	chr9:96007000-96008400	Enhancers	Hela-S3	cervix
44	chr9:96007000-96009000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
45	chr9:96007000-96009000	Enhancers	Fetal Heart	heart
46	chr9:96007000-96009200	Weak transcription	Brain Germinal Matrix	brain
47	chr9:96007000-96014800	Weak transcription	Brain Substantia Nigra	brain
48	chr9:96007000-96020400	Weak transcription	Fetal Muscle Leg	muscle
49	chr9:96007200-96007800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr9:96007200-96007800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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