Variant report

Variant	rs10821307
Chromosome Location	chr9:96922312-96922313
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96917519..96921263-chr9:96921727..96924790,3	MCF-7	breast:
2	chr9:96901085..96902966-chr9:96921856..96923977,2	K562	blood:
3	chr9:96912919..96916926-chr9:96917380..96923023,7	K562	blood:
4	chr9:96901466..96904094-chr9:96921471..96923356,3	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10115278	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10117272	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10117305	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10122644	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10512232	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821312	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821315	0.84[AFR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993093	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12342389	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12345620	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12378444	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4744321	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4744324	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4744326	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6479530	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67631527	0.86[ASN][1000 genomes]
rs7038156	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7865658	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8115	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482457	chr9:96813852-96996170	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	217 gene(s)	inside rSNPs	diseases
2	nsv831655	chr9:96834042-97042009	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	218 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96904000-96927200	Weak transcription	Thymus	Thymus
2	chr9:96918800-96922400	Enhancers	HepG2	liver
3	chr9:96919000-96922400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr9:96919200-96924000	Enhancers	Placenta Amnion	Placenta Amnion
5	chr9:96919400-96925800	Weak transcription	Spleen	Spleen
6	chr9:96919400-96927600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr9:96919400-96927800	Weak transcription	Psoas Muscle	Psoas
8	chr9:96919600-96922800	Weak transcription	Esophagus	oesophagus
9	chr9:96919600-96926000	Weak transcription	Primary T cells from cord blood	blood
10	chr9:96919600-96927800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr9:96919600-96927800	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr9:96919800-96927200	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr9:96920000-96923000	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr9:96920000-96923200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr9:96920000-96927400	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr9:96920000-96927800	Weak transcription	Fetal Muscle Trunk	muscle
17	chr9:96920000-96927800	Weak transcription	Left Ventricle	heart
18	chr9:96920000-96927800	Weak transcription	Pancreas	Pancrea
19	chr9:96920000-96927800	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr9:96920200-96922800	Weak transcription	A549	lung
21	chr9:96920200-96927600	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr9:96920800-96922400	Enhancers	Placenta	Placenta
23	chr9:96921000-96922400	Enhancers	Brain Anterior Caudate	brain
24	chr9:96921000-96922800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr9:96921000-96922800	Enhancers	Fetal Stomach	stomach
26	chr9:96921000-96924200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr9:96921400-96922400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr9:96921400-96922400	Enhancers	Adipose Nuclei	Adipose
29	chr9:96921400-96922400	Enhancers	Brain Cingulate Gyrus	brain
30	chr9:96921400-96922400	Enhancers	HSMMtube	muscle
31	chr9:96921400-96922600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr9:96921400-96922600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr9:96921400-96922600	Enhancers	Cortex derived primary cultured neurospheres	brain
34	chr9:96921400-96922600	Enhancers	NHDF-Ad	bronchial
35	chr9:96921400-96923000	Enhancers	Colon Smooth Muscle	Colon
36	chr9:96921400-96923200	Enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr9:96921400-96923200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr9:96921600-96922400	Enhancers	Brain Inferior Temporal Lobe	brain
39	chr9:96921600-96922400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
40	chr9:96921600-96922400	Enhancers	Fetal Heart	heart
41	chr9:96921600-96922400	Enhancers	Fetal Kidney	kidney
42	chr9:96921600-96922400	Enhancers	NH-A	brain
43	chr9:96921600-96922400	Enhancers	NHLF	lung
44	chr9:96921600-96922600	Enhancers	Osteobl	bone
45	chr9:96921600-96923200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr9:96921600-96923200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr9:96921600-96923400	Enhancers	Fetal Muscle Leg	muscle
48	chr9:96921600-96926000	Weak transcription	Primary hematopoietic stem cells	blood
49	chr9:96921600-96927600	Weak transcription	Brain Substantia Nigra	brain
50	chr9:96921800-96922800	Weak transcription	K562	blood

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