Variant report

Variant	rs67631527
Chromosome Location	chr9:96917239-96917240
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96909256..96912834-chr9:96914432..96917620,5	K562	blood:
2	chr9:96904108..96906275-chr9:96917076..96919477,3	K562	blood:
3	chr9:96904165..96905717-chr9:96916765..96919408,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10115278	0.86[ASN][1000 genomes]
rs10117272	0.86[ASN][1000 genomes]
rs10117305	0.86[ASN][1000 genomes]
rs10122644	0.86[ASN][1000 genomes]
rs10512232	0.86[ASN][1000 genomes]
rs10821307	0.86[ASN][1000 genomes]
rs10821312	0.86[ASN][1000 genomes]
rs10821315	0.86[ASN][1000 genomes]
rs10993093	0.86[ASN][1000 genomes]
rs12342389	0.86[ASN][1000 genomes]
rs12345620	0.86[ASN][1000 genomes]
rs12378444	0.86[ASN][1000 genomes]
rs4744321	0.86[ASN][1000 genomes]
rs4744324	0.86[ASN][1000 genomes]
rs4744326	0.86[ASN][1000 genomes]
rs6479530	0.86[ASN][1000 genomes]
rs7865658	0.86[ASN][1000 genomes]
rs8115	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482457	chr9:96813852-96996170	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	217 gene(s)	inside rSNPs	diseases
2	nsv831655	chr9:96834042-97042009	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	218 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96904000-96927200	Weak transcription	Thymus	Thymus
2	chr9:96913400-96918800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:96913800-96919000	Weak transcription	Osteobl	bone
4	chr9:96914000-96919000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr9:96914000-96919000	Weak transcription	Fetal Lung	lung
6	chr9:96914000-96919000	Weak transcription	Fetal Stomach	stomach
7	chr9:96914000-96921000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr9:96914000-96921400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr9:96914200-96918600	Weak transcription	Lung	lung
10	chr9:96914200-96918800	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr9:96914200-96919000	Weak transcription	HSMM	muscle
12	chr9:96914200-96919000	Weak transcription	HSMMtube	muscle
13	chr9:96914200-96919400	Weak transcription	Fetal Kidney	kidney
14	chr9:96914200-96921400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr9:96914400-96918400	Weak transcription	Adipose Nuclei	Adipose
16	chr9:96914400-96918800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr9:96914400-96918800	Weak transcription	HepG2	liver
18	chr9:96914400-96919000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr9:96914400-96919000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr9:96915200-96918600	Weak transcription	Spleen	Spleen
21	chr9:96915600-96918600	Weak transcription	Fetal Muscle Leg	muscle
22	chr9:96916400-96918800	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr9:96916800-96919000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr9:96917000-96917800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr9:96917000-96918200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr9:96917000-96918400	Weak transcription	Primary hematopoietic stem cells	blood
27	chr9:96917000-96918600	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr9:96917000-96918800	Weak transcription	Primary B cells from cord blood	blood
29	chr9:96917000-96918800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr9:96917000-96919000	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr9:96917200-96917400	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr9:96917200-96918400	Weak transcription	Primary B cells from peripheral blood	blood
33	chr9:96917200-96918400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr9:96917200-96918400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr9:96917200-96919000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr9:96917200-96919400	Weak transcription	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links