Variant report

Variant	rs10821325
Chromosome Location	chr9:97018657-97018658
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:6)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:6 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ATF1	chr9:97018366-97018736	K562	blood:	n/a	n/a
2	GTF2F1	chr9:97018644-97018787	K562	blood:	n/a	n/a
3	ARID3A	chr9:97018517-97018706	K562	blood:	n/a	n/a
4	EP300	chr9:97018625-97018786	K562	blood:	n/a	n/a
5	EP300	chr9:97018380-97018661	K562	blood:	n/a	n/a
6	RCOR1	chr9:97018330-97018689	K562	blood:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:97017106..97019746-chr9:97019872..97021495,2	K562	blood:
2	chr9:97015612..97017858-chr9:97018523..97020622,2	MCF-7	breast:
3	chr9:97017627..97019343-chr9:97026034..97028389,2	K562	blood:
4	chr9:97000881..97002624-chr9:97017487..97019622,2	K562	blood:

No data

Variant related genes	Relation type
ZNF169	TF binding region

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10821326	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.97[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993124	0.84[ASN][1000 genomes]
rs16912862	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs2479602	0.83[CHB][hapmap];0.83[CHD][hapmap];0.91[MKK][hapmap]
rs3118753	0.80[ASN][1000 genomes]
rs3118754	0.80[ASN][1000 genomes]
rs3118756	1.00[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.91[MKK][hapmap];0.81[TSI][hapmap];0.84[ASN][1000 genomes]
rs3118761	0.84[ASN][1000 genomes]
rs3118762	0.83[ASN][1000 genomes]
rs3118765	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3131899	0.95[CHB][hapmap];0.98[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.91[MKK][hapmap];0.86[TSI][hapmap];0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs3131901	0.85[ASN][1000 genomes]
rs3131902	0.85[ASN][1000 genomes]
rs3131904	0.85[ASN][1000 genomes]
rs3131910	0.91[CHB][hapmap];0.86[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.82[MKK][hapmap]
rs4744329	0.87[ASN][1000 genomes]
rs4744346	0.83[CHB][hapmap];0.83[CHD][hapmap];0.91[MKK][hapmap]
rs62578820	0.85[ASN][1000 genomes]
rs6479537	0.82[CHB][hapmap]
rs688165	0.83[CHB][hapmap];0.83[CHD][hapmap];0.91[MKK][hapmap]
rs7027606	0.81[JPT][hapmap]
rs9299422	0.83[CHB][hapmap]
rs9409511	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs9409512	0.91[CHB][hapmap];0.83[CHD][hapmap];0.81[GIH][hapmap];0.82[JPT][hapmap];0.95[MEX][hapmap];0.82[MKK][hapmap]
rs9409513	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs9409759	0.82[CHB][hapmap]
rs9696843	0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831655	chr9:96834042-97042009	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	218 gene(s)	inside rSNPs	diseases
2	esv3394266	chr9:96935210-97045514	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	195 gene(s)	inside rSNPs	diseases
3	nsv893592	chr9:96973995-97295269	Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv1054784	chr9:96976419-97025515	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv540174	chr9:96976419-97025515	Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1046906	chr9:96999227-97239809	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97013800-97020800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr9:97018000-97020800	Weak transcription	Primary T helper cells fromperipheralblood	blood

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