Variant report

Variant	rs7027606
Chromosome Location	chr9:97043059-97043060
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97039772..97041932-chr9:97042019..97043715,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000175787	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10435925	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10435926	0.80[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10821325	0.81[JPT][hapmap]
rs10821326	0.81[JPT][hapmap]
rs10821327	0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs10993127	0.80[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.93[TSI][hapmap];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10993130	0.90[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs10993131	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10993137	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10993139	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10993140	0.99[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10993143	0.95[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10993144	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10993147	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10993151	0.92[AMR][1000 genomes]
rs11533012	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11535539	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12235386	0.95[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12235970	0.90[CHB][hapmap];0.81[CHD][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.95[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12236219	0.85[CHB][hapmap];0.83[GIH][hapmap];0.94[AMR][1000 genomes]
rs12344865	0.99[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs12347577	0.90[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs1328305	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs3118756	0.81[JPT][hapmap]
rs3118766	0.86[CHB][hapmap];0.83[CHD][hapmap];0.95[JPT][hapmap]
rs3131899	0.81[JPT][hapmap]
rs7024151	0.83[AMR][1000 genomes]
rs7024423	0.83[AMR][1000 genomes]
rs7024915	0.91[AMR][1000 genomes]
rs7028040	0.80[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7028530	0.83[AMR][1000 genomes]
rs7042481	0.85[CHB][hapmap]
rs7045405	0.91[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7858082	0.85[CHB][hapmap]
rs9409515	0.85[AMR][1000 genomes]
rs9695761	0.99[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9696597	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9696843	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3394266	chr9:96935210-97045514	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	195 gene(s)	inside rSNPs	diseases
2	nsv893592	chr9:96973995-97295269	Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv1046906	chr9:96999227-97239809	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	esv2761545	chr9:97025298-97356950	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97022200-97055200	Weak transcription	Aorta	Aorta
2	chr9:97022600-97055200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr9:97022800-97054600	Weak transcription	Pancreas	Pancrea
4	chr9:97023000-97050000	Weak transcription	Right Ventricle	heart
5	chr9:97023000-97055400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr9:97030200-97048400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr9:97031800-97050400	Weak transcription	Psoas Muscle	Psoas
8	chr9:97032400-97064600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr9:97033600-97054600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr9:97036800-97062600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr9:97037400-97050200	Weak transcription	Colon Smooth Muscle	Colon
12	chr9:97037600-97044600	Weak transcription	Fetal Stomach	stomach
13	chr9:97039200-97053600	Weak transcription	Brain Hippocampus Middle	brain
14	chr9:97039200-97055000	Weak transcription	Brain Substantia Nigra	brain
15	chr9:97039200-97062600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr9:97039400-97054600	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr9:97039400-97067600	Weak transcription	Brain Cingulate Gyrus	brain
18	chr9:97040000-97064600	Weak transcription	Brain Germinal Matrix	brain
19	chr9:97040400-97043200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr9:97040400-97046000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr9:97040400-97046000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr9:97040400-97046000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
23	chr9:97040600-97043400	Strong transcription	Primary T helper cells PMA-I stimulated	--
24	chr9:97040600-97043800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr9:97040600-97044000	Strong transcription	Primary T helper cells fromperipheralblood	blood
26	chr9:97040600-97044000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr9:97040600-97044200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr9:97040600-97045400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
29	chr9:97040600-97046200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr9:97040600-97046600	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
31	chr9:97040800-97043200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
32	chr9:97040800-97043200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr9:97040800-97043200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr9:97040800-97043200	Strong transcription	Fetal Muscle Leg	muscle
35	chr9:97040800-97043200	ZNF genes & repeats	Dnd41	blood
36	chr9:97040800-97043400	ZNF genes & repeats	Thymus	Thymus
37	chr9:97040800-97043800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr9:97040800-97043800	Strong transcription	Fetal Muscle Trunk	muscle
39	chr9:97040800-97044000	Strong transcription	Primary T cells fromperipheralblood	blood
40	chr9:97040800-97044000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
41	chr9:97041000-97043200	Strong transcription	Adipose Nuclei	Adipose
42	chr9:97041000-97043400	Strong transcription	Ovary	ovary
43	chr9:97041000-97043800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr9:97041200-97043600	ZNF genes & repeats	Primary T cells from cord blood	blood
45	chr9:97041200-97043800	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr9:97041200-97048400	Weak transcription	NH-A	brain
47	chr9:97041200-97050000	Weak transcription	Gastric	stomach
48	chr9:97041200-97051600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr9:97041200-97054400	Weak transcription	NHDF-Ad	bronchial
50	chr9:97041200-97054600	Weak transcription	Stomach Mucosa	stomach

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