Variant report

Variant	rs10821345
Chromosome Location	chr9:97226018-97226019
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97220678..97222830-chr9:97224349..97226700,3	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10821352	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10993210	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11789704	0.98[ASN][1000 genomes]
rs12002028	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12004014	0.97[EUR][1000 genomes]
rs12236578	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16909983	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16910109	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2486632	0.86[ASN][1000 genomes]
rs4612412	0.97[ASN][1000 genomes]
rs4744345	0.97[ASN][1000 genomes]
rs55877910	0.89[ASN][1000 genomes]
rs56987829	0.85[EUR][1000 genomes]
rs61628907	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs639276	0.95[ASN][1000 genomes]
rs9409546	0.97[ASN][1000 genomes]
rs9409550	0.98[ASN][1000 genomes]
rs9409564	0.99[ASN][1000 genomes]
rs9409565	0.92[ASN][1000 genomes]
rs9409567	0.92[ASN][1000 genomes]
rs9409767	1.00[ASN][1000 genomes]
rs9409771	0.98[ASN][1000 genomes]
rs9409778	0.99[ASN][1000 genomes]
rs9409780	0.94[ASN][1000 genomes]
rs9409787	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893592	chr9:96973995-97295269	Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1046906	chr9:96999227-97239809	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv2761545	chr9:97025298-97356950	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv1041195	chr9:97054795-97402378	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv893593	chr9:97196979-97228918	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Active TSS	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
6	esv1840205	chr9:97202200-97366400	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
7	nsv893594	chr9:97221463-97283226	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10821345	HIATL1	cis	Whole Blood	GTEx

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97204400-97227000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:97217000-97226600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr9:97220000-97226400	Weak transcription	HepG2	liver
4	chr9:97220400-97227000	Weak transcription	Gastric	stomach
5	chr9:97222200-97227000	Weak transcription	Esophagus	oesophagus
6	chr9:97222600-97237800	Weak transcription	Stomach Mucosa	stomach
7	chr9:97222800-97226600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr9:97222800-97226800	Weak transcription	Left Ventricle	heart
9	chr9:97223600-97226600	Weak transcription	Fetal Thymus	thymus
10	chr9:97223800-97226200	Weak transcription	Colonic Mucosa	Colon
11	chr9:97223800-97226800	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr9:97224000-97226600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr9:97224200-97226200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr9:97224200-97226400	Weak transcription	Adipose Nuclei	Adipose
15	chr9:97224200-97226800	Weak transcription	Fetal Brain Male	brain
16	chr9:97224200-97227000	Weak transcription	Liver	Liver
17	chr9:97224200-97227000	Weak transcription	Psoas Muscle	Psoas
18	chr9:97224400-97226200	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr9:97224400-97226600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr9:97224400-97226600	Weak transcription	Brain Substantia Nigra	brain
21	chr9:97224400-97226600	Weak transcription	Fetal Brain Female	brain
22	chr9:97224400-97226600	Weak transcription	Osteobl	bone
23	chr9:97224400-97227800	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr9:97224600-97226600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr9:97224600-97226800	Weak transcription	NH-A	brain
26	chr9:97224600-97227000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr9:97225000-97226600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr9:97225000-97226600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr9:97225000-97226800	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr9:97225000-97227200	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr9:97225200-97226400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr9:97225200-97226600	Weak transcription	Brain Hippocampus Middle	brain
33	chr9:97225200-97226600	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr9:97225200-97226800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr9:97225200-97226800	Weak transcription	Fetal Muscle Leg	muscle
36	chr9:97225200-97226800	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr9:97225200-97226800	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr9:97225200-97227000	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr9:97225200-97227000	Weak transcription	Aorta	Aorta
40	chr9:97225200-97227000	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr9:97225200-97227000	Weak transcription	Placenta	Placenta
42	chr9:97225200-97227400	Weak transcription	HUVEC	blood vessel
43	chr9:97225200-97228000	Weak transcription	HMEC	breast
44	chr9:97225400-97226600	Weak transcription	Primary T cells from cord blood	blood
45	chr9:97225400-97226600	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr9:97225400-97226600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr9:97225400-97226600	Weak transcription	Brain Germinal Matrix	brain
48	chr9:97225400-97227000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr9:97225400-97227200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr9:97225400-97227200	Weak transcription	Thymus	Thymus

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