Variant report

Variant	rs9409787
Chromosome Location	chr9:97261572-97261573
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97245654..97249341-chr9:97260999..97264040,3	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10821345	0.91[ASN][1000 genomes]
rs10821352	1.00[CHB][hapmap];0.95[CHD][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs10993210	0.90[ASN][1000 genomes]
rs11789704	0.89[ASN][1000 genomes]
rs12002028	0.89[ASN][1000 genomes]
rs12236219	0.85[CHB][hapmap];0.88[CHD][hapmap]
rs12236578	0.83[ASN][1000 genomes]
rs16909983	0.95[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs16910109	0.95[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs1752784	0.90[CHB][hapmap];0.85[CHD][hapmap]
rs1752786	0.82[JPT][hapmap]
rs2486632	0.95[CHB][hapmap];0.90[CHD][hapmap];0.94[JPT][hapmap]
rs2769813	0.95[CHB][hapmap];0.90[CHD][hapmap];0.94[JPT][hapmap]
rs2769816	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs4612412	0.88[ASN][1000 genomes]
rs4744338	0.95[CHB][hapmap];0.90[CHD][hapmap];0.94[JPT][hapmap]
rs4744345	0.95[CHB][hapmap];0.90[CHD][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs55877910	0.82[ASN][1000 genomes]
rs61628907	0.89[ASN][1000 genomes]
rs639276	0.95[CHB][hapmap];0.90[CHD][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs7031088	0.80[CHD][hapmap]
rs7042481	0.85[CHB][hapmap];0.88[CHD][hapmap]
rs7848227	0.81[JPT][hapmap]
rs7858082	0.85[CHB][hapmap]
rs9409546	0.95[CHB][hapmap];0.90[CHD][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs9409550	0.89[ASN][1000 genomes]
rs9409564	0.90[ASN][1000 genomes]
rs9409565	0.94[ASN][1000 genomes]
rs9409567	0.93[ASN][1000 genomes]
rs9409767	0.91[ASN][1000 genomes]
rs9409771	0.89[ASN][1000 genomes]
rs9409778	0.90[ASN][1000 genomes]
rs9409780	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893592	chr9:96973995-97295269	Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	esv2761545	chr9:97025298-97356950	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1041195	chr9:97054795-97402378	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	esv1840205	chr9:97202200-97366400	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv893594	chr9:97221463-97283226	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv614916	chr9:97245822-97273659	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv969761	chr9:97254596-97288069	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9409787	ZNF484	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97241800-97262800	Weak transcription	Liver	Liver
2	chr9:97261200-97272600	Weak transcription	Pancreas	Pancrea
3	chr9:97261400-97262200	Enhancers	Duodenum Mucosa	Duodenum

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