Variant report

Variant	rs10821433
Chromosome Location	chr9:97772712-97772713
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:97771036..97773650-chr9:97778187..97780629,2	K562	blood:
2	chr9:97772446..97776004-chr9:97866953..97870204,3	MCF-7	breast:
3	chr9:97671639..97694679-chr9:97760418..97786060,142	MCF-7	breast:
4	chr9:97772268..97775206-chr9:97807423..97809466,2	K562	blood:
5	chr9:97752670..97754568-chr9:97772070..97774701,2	K562	blood:
6	chr9:97543390..97547292-chr9:97769751..97772749,5	MCF-7	breast:
7	chr9:97770812..97773643-chr9:97773924..97776829,2	K562	blood:
8	chr9:97674991..97691307-chr9:97751911..97773298,151	MCF-7	breast:
9	chr9:97771150..97772727-chr9:97906869..97908913,2	MCF-7	breast:
10	chr9:97763635..97773461-chr9:97847821..97861280,36	MCF-7	breast:
11	chr9:97707270..97710081-chr9:97771865..97774165,2	MCF-7	breast:
12	chr9:97723418..97725512-chr9:97771283..97773130,2	MCF-7	breast:
13	chr9:97399443..97401665-chr9:97771079..97774076,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000207617	Chromatin interaction
ENSG00000148120	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1020963	0.89[JPT][hapmap]
rs10761368	1.00[JPT][hapmap]
rs10993390	1.00[CEU][hapmap]
rs10993391	1.00[CEU][hapmap]
rs10993456	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10993457	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10993460	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12337251	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs12339639	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12340107	0.82[CEU][hapmap];0.80[EUR][1000 genomes]
rs12344584	0.90[CHB][hapmap];0.84[JPT][hapmap];0.90[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12346261	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12349263	1.00[CEU][hapmap]
rs1412488	0.89[JPT][hapmap]
rs4744422	0.89[JPT][hapmap]
rs4744431	0.88[JPT][hapmap]
rs6479588	0.89[JPT][hapmap]
rs7023719	0.91[YRI][hapmap]
rs7046845	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs72621414	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933919	chr9:97619512-97919344	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97767800-97773600	Transcr. at gene 5' and 3'	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr9:97767800-97775200	Transcr. at gene 5' and 3'	A549	lung
3	chr9:97768000-97776400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr9:97768000-97781000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr9:97768000-97781000	Weak transcription	Gastric	stomach
6	chr9:97768000-97783800	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr9:97768000-97786200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr9:97768200-97779400	Weak transcription	Fetal Brain Female	brain
9	chr9:97768200-97779800	Weak transcription	K562	blood
10	chr9:97768800-97781800	Weak transcription	Primary hematopoietic stem cells	blood
11	chr9:97768800-97785600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr9:97769000-97779400	Weak transcription	GM12878-XiMat	blood
13	chr9:97769000-97783800	Weak transcription	Fetal Brain Male	brain
14	chr9:97769000-97787600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr9:97769200-97772800	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr9:97769600-97784200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr9:97769600-97790200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr9:97770000-97781200	Weak transcription	Small Intestine	intestine
19	chr9:97770400-97774600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr9:97770600-97773200	Strong transcription	Placenta	Placenta
21	chr9:97770600-97774200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr9:97770600-97780800	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr9:97770800-97773800	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr9:97770800-97777400	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr9:97770800-97781600	Weak transcription	Colonic Mucosa	Colon
26	chr9:97770800-97782000	Weak transcription	Fetal Muscle Trunk	muscle
27	chr9:97770800-97782200	Weak transcription	Lung	lung
28	chr9:97770800-97810000	Weak transcription	Primary T cells from cord blood	blood
29	chr9:97771000-97772800	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr9:97771000-97773200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr9:97771000-97773200	Genic enhancers	NH-A	brain
32	chr9:97771000-97773400	Enhancers	Fetal Heart	heart
33	chr9:97771000-97774200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr9:97771000-97775800	Enhancers	Brain Hippocampus Middle	brain
35	chr9:97771000-97777000	Weak transcription	Duodenum Mucosa	Duodenum
36	chr9:97771000-97778200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr9:97771000-97780800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr9:97771000-97781600	Weak transcription	Primary B cells from cord blood	blood
39	chr9:97771200-97772800	Genic enhancers	NHLF	lung
40	chr9:97771200-97773200	Genic enhancers	HepG2	liver
41	chr9:97771200-97774000	Genic enhancers	Left Ventricle	heart
42	chr9:97771200-97774800	Genic enhancers	HSMM	muscle
43	chr9:97771200-97776000	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr9:97771200-97777400	Genic enhancers	NHDF-Ad	bronchial
45	chr9:97771200-97777600	Weak transcription	Fetal Kidney	kidney
46	chr9:97771400-97773000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr9:97771400-97773200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr9:97771400-97774000	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr9:97771400-97774200	Strong transcription	Liver	Liver
50	chr9:97771400-97774800	Strong transcription	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links