Variant report

Variant	rs7023719
Chromosome Location	chr9:97785248-97785249
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:97671639..97694679-chr9:97760418..97786060,142	MCF-7	breast:
2	chr9:97785037..97786966-chr9:97789243..97791413,3	MCF-7	breast:
3	chr9:97783764..97786051-chr9:97788470..97790440,2	K562	blood:

Variant related genes	Relation type
ENSG00000148120	Chromatin interaction

rs_ID	r²[population]
rs1020962	1.00[CEU][hapmap]
rs1020963	0.81[CHB][hapmap]
rs10217441	1.00[CEU][hapmap]
rs1038092	1.00[CEU][hapmap];0.86[MEX][hapmap]
rs10512250	0.85[JPT][hapmap]
rs10732407	1.00[CEU][hapmap]
rs10761362	1.00[CEU][hapmap]
rs10761368	0.81[CHB][hapmap]
rs10761371	1.00[CEU][hapmap]
rs10821433	0.91[YRI][hapmap]
rs10993409	0.85[JPT][hapmap]
rs10993420	0.85[JPT][hapmap]
rs10993422	0.85[JPT][hapmap]
rs10993423	0.85[JPT][hapmap]
rs10993425	0.85[JPT][hapmap]
rs10993429	0.85[JPT][hapmap]
rs10993435	0.93[CHB][hapmap]
rs10993438	0.82[JPT][hapmap]
rs10993443	0.85[JPT][hapmap]
rs10993445	0.85[JPT][hapmap]
rs10993446	0.85[JPT][hapmap]
rs10993449	0.93[CHB][hapmap]
rs10993451	0.85[JPT][hapmap]
rs10993456	0.93[YRI][hapmap]
rs10993471	0.86[MEX][hapmap]
rs12236420	0.85[JPT][hapmap]
rs12236825	0.85[JPT][hapmap]
rs12238576	0.85[JPT][hapmap]
rs12339639	0.93[YRI][hapmap];0.83[AFR][1000 genomes]
rs12344584	0.85[YRI][hapmap];0.83[AFR][1000 genomes]
rs12346261	0.93[YRI][hapmap];0.83[AFR][1000 genomes]
rs1412488	0.81[CHB][hapmap]
rs1542108	1.00[CEU][hapmap]
rs1564235	1.00[CEU][hapmap]
rs1571896	1.00[CEU][hapmap]
rs1571897	0.86[MEX][hapmap]
rs16911884	0.85[JPT][hapmap]
rs16911887	0.85[JPT][hapmap]
rs1871220	1.00[CEU][hapmap]
rs1888944	1.00[CEU][hapmap]
rs2061798	1.00[CEU][hapmap]
rs2061799	1.00[CEU][hapmap]
rs2061801	1.00[CEU][hapmap]
rs2306207	0.86[MEX][hapmap]
rs2896816	0.93[CHB][hapmap]
rs3739748	1.00[CEU][hapmap];0.86[MEX][hapmap]
rs3802457	0.85[JPT][hapmap]
rs3802458	0.85[JPT][hapmap]
rs4332191	1.00[CEU][hapmap]
rs4743972	1.00[CEU][hapmap]
rs4743975	1.00[CEU][hapmap];0.86[MEX][hapmap]
rs4743977	1.00[CEU][hapmap]
rs4744421	1.00[CEU][hapmap]
rs4744422	0.81[CHB][hapmap]
rs4744431	0.86[CHB][hapmap]
rs6479578	1.00[CEU][hapmap]
rs6479588	0.81[CHB][hapmap]
rs6479589	0.82[MEX][hapmap]
rs7019602	1.00[CEU][hapmap]
rs7022739	0.86[MEX][hapmap]
rs7022963	1.00[CEU][hapmap]
rs7025100	1.00[CEU][hapmap]
rs7042271	0.93[CHB][hapmap];0.88[MEX][hapmap]
rs7867856	1.00[CEU][hapmap]
rs7867908	0.85[JPT][hapmap]
rs7875888	0.85[JPT][hapmap]
rs894426	1.00[CEU][hapmap]

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933919	chr9:97619512-97919344	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97768000-97786200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr9:97768800-97785600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr9:97769000-97787600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr9:97769600-97790200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr9:97770800-97810000	Weak transcription	Primary T cells from cord blood	blood
6	chr9:97773200-97793200	Weak transcription	Brain Germinal Matrix	brain
7	chr9:97776400-97785400	Strong transcription	Fetal Intestine Large	intestine
8	chr9:97777400-97794200	Weak transcription	Thymus	Thymus
9	chr9:97778800-97786200	Genic enhancers	Osteobl	bone
10	chr9:97779400-97789200	Genic enhancers	Liver	Liver
11	chr9:97780200-97788000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr9:97780200-97788200	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr9:97780600-97786600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr9:97780600-97790800	Weak transcription	Fetal Brain Female	brain
15	chr9:97780800-97786000	Genic enhancers	Left Ventricle	heart
16	chr9:97781000-97786400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr9:97781200-97785600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr9:97781200-97786400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr9:97781200-97787400	Genic enhancers	NHLF	lung
20	chr9:97781200-97793600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr9:97781400-97785400	Genic enhancers	HSMM	muscle
22	chr9:97781400-97786200	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr9:97781400-97793200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr9:97781400-97793600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr9:97781600-97785400	Genic enhancers	Muscle Satellite Cultured Cells	--
26	chr9:97781600-97785400	Genic enhancers	NHDF-Ad	bronchial
27	chr9:97781600-97786200	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr9:97781600-97787000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr9:97781600-97787200	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr9:97782000-97792800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr9:97782400-97786000	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr9:97782600-97793600	Weak transcription	Primary hematopoietic stem cells	blood
33	chr9:97782800-97785400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr9:97782800-97785400	Weak transcription	Stomach Mucosa	stomach
35	chr9:97782800-97786200	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr9:97782800-97787600	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr9:97783200-97785400	Enhancers	Fetal Heart	heart
38	chr9:97783200-97789400	Enhancers	Brain Substantia Nigra	brain
39	chr9:97783400-97789000	Transcr. at gene 5' and 3'	A549	lung
40	chr9:97783600-97794000	Weak transcription	GM12878-XiMat	blood
41	chr9:97783800-97789000	Genic enhancers	HSMMtube	muscle
42	chr9:97783800-97789600	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr9:97784000-97786400	Enhancers	Rectal Smooth Muscle	rectum
44	chr9:97784200-97785400	Weak transcription	Brain Angular Gyrus	brain
45	chr9:97784200-97785400	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr9:97784200-97785400	Weak transcription	Right Atrium	heart
47	chr9:97784200-97786600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr9:97784200-97786600	Weak transcription	Duodenum Mucosa	Duodenum
49	chr9:97784200-97786600	Weak transcription	Gastric	stomach
50	chr9:97784200-97787600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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