Variant report

Variant rs1571896
Chromosome Location chr9:97781813-97781814
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:107 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr9:97768000-97783800 Weak transcription Primary T helper cells fromperipheralblood blood
2 chr9:97768000-97786200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
3 chr9:97768800-97785600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
4 chr9:97769000-97783800 Weak transcription Fetal Brain Male brain
5 chr9:97769000-97787600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
6 chr9:97769600-97784200 Weak transcription iPS-18 Cell Line embryonic stem cell
7 chr9:97769600-97790200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
8 chr9:97770800-97782000 Weak transcription Fetal Muscle Trunk muscle
9 chr9:97770800-97782200 Weak transcription Lung lung
10 chr9:97770800-97810000 Weak transcription Primary T cells from cord blood blood
11 chr9:97772000-97782200 Weak transcription Esophagus oesophagus
12 chr9:97773000-97782200 Weak transcription Spleen Spleen
13 chr9:97773200-97793200 Weak transcription Brain Germinal Matrix brain
14 chr9:97776000-97784400 Strong transcription Rectal Mucosa Donor 29 rectum
15 chr9:97776000-97784600 Strong transcription Placenta Placenta
16 chr9:97776400-97785400 Strong transcription Fetal Intestine Large intestine
17 chr9:97777200-97782200 Weak transcription Stomach Mucosa stomach
18 chr9:97777400-97794200 Weak transcription Thymus Thymus
19 chr9:97778800-97786200 Genic enhancers Osteobl bone
20 chr9:97779000-97782800 Genic enhancers HSMMtube muscle
21 chr9:97779200-97782200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
22 chr9:97779200-97782200 Weak transcription Fetal Intestine Small intestine
23 chr9:97779200-97782400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
24 chr9:97779400-97782400 Genic enhancers Duodenum Smooth Muscle Duodenum
25 chr9:97779400-97782800 Transcr. at gene 5' and 3' A549 lung
26 chr9:97779400-97789200 Genic enhancers Liver Liver
27 chr9:97779800-97782800 Transcr. at gene 5' and 3' Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
28 chr9:97780000-97782000 Active TSS Aorta Aorta
29 chr9:97780000-97782200 Enhancers Placenta Amnion Placenta Amnion
30 chr9:97780200-97782000 Genic enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
31 chr9:97780200-97782200 Weak transcription Sigmoid Colon Sigmoid Colon
32 chr9:97780200-97783600 Weak transcription Monocytes-CD14+_RO01746 blood
33 chr9:97780200-97785200 Weak transcription Cortex derived primary cultured neurospheres brain
34 chr9:97780200-97788000 Weak transcription iPS-20b Cell Line embryonic stem cell
35 chr9:97780200-97788200 Weak transcription HUES48 Cell Line embryonic stem cell
36 chr9:97780600-97786600 Weak transcription H9 Cell Line embryonic stem cell
37 chr9:97780600-97790800 Weak transcription Fetal Brain Female brain
38 chr9:97780800-97782600 Genic enhancers Adipose Nuclei Adipose
39 chr9:97780800-97784400 Enhancers Brain Dorsolateral Prefrontal Cortex brain
40 chr9:97780800-97786000 Genic enhancers Left Ventricle heart
41 chr9:97781000-97782000 Enhancers Primary hematopoietic stem cells short term culture blood
42 chr9:97781000-97782000 Enhancers Pancreatic Islets Pancreatic Islet
43 chr9:97781000-97782800 Genic enhancers Rectal Mucosa Donor 31 rectum
44 chr9:97781000-97784200 Strong transcription Hela-S3 cervix
45 chr9:97781000-97786400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
46 chr9:97781200-97782000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
47 chr9:97781200-97782200 Weak transcription HUES6 Cell Line embryonic stem cell
48 chr9:97781200-97782200 Enhancers Rectal Smooth Muscle rectum
49 chr9:97781200-97782200 Strong transcription HepG2 liver
50 chr9:97781200-97782400 Strong transcription Gastric stomach

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