Variant report

Variant	rs10761362
Chromosome Location	chr9:97647314-97647315
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:97579045..97581444-chr9:97644293..97648187,3	MCF-7	breast:
2	chr9:97643198..97646263-chr9:97646433..97648842,3	MCF-7	breast:
3	chr9:97646727..97648415-chr9:97756453..97758044,2	MCF-7	breast:
4	chr9:97640769..97645412-chr9:97646279..97650520,7	MCF-7	breast:
5	chr9:97646214..97649715-chr9:97676410..97681725,5	MCF-7	breast:
6	chr9:97647198..97648979-chr9:97662431..97664463,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000236095	Chromatin interaction

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs10125566	0.97[AMR][1000 genomes]
rs1020962	1.00[CEU][hapmap]
rs10217441	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1038092	1.00[CEU][hapmap]
rs10732407	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10739988	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes]
rs10739990	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10739991	0.89[AMR][1000 genomes]
rs10761363	0.81[AMR][1000 genomes]
rs10761371	1.00[CEU][hapmap]
rs10821407	0.80[AMR][1000 genomes]
rs10821411	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10993386	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1113967	0.97[AMR][1000 genomes]
rs12551506	0.81[AMR][1000 genomes]
rs12552838	0.81[AMR][1000 genomes]
rs12554043	0.88[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes]
rs12555128	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs12683896	0.81[AMR][1000 genomes]
rs1530331	0.88[MEX][hapmap];0.85[TSI][hapmap];0.80[AMR][1000 genomes]
rs1542107	0.88[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes]
rs1542108	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1564235	1.00[CEU][hapmap]
rs1571896	1.00[CEU][hapmap]
rs16911834	0.81[AMR][1000 genomes]
rs1871220	1.00[CEU][hapmap]
rs1888944	1.00[CEU][hapmap]
rs2026399	0.88[MEX][hapmap];1.00[TSI][hapmap]
rs2061798	1.00[CEU][hapmap]
rs2061799	1.00[CEU][hapmap]
rs2061801	1.00[CEU][hapmap]
rs2095069	0.88[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes]
rs2119953	0.97[AMR][1000 genomes]
rs2165715	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];0.85[TSI][hapmap]
rs2406897	0.97[AMR][1000 genomes]
rs2406898	1.00[TSI][hapmap];0.97[AMR][1000 genomes]
rs2584805	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[TSI][hapmap]
rs2897523	0.97[AMR][1000 genomes]
rs356125	1.00[CHB][hapmap]
rs356128	1.00[CHB][hapmap]
rs356133	1.00[CHB][hapmap]
rs356147	1.00[CHB][hapmap]
rs356148	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[TSI][hapmap]
rs3739748	1.00[CEU][hapmap]
rs3847311	0.95[AMR][1000 genomes]
rs3886568	0.88[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes]
rs3887267	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[TSI][hapmap]
rs3910730	0.81[AMR][1000 genomes]
rs4332191	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes]
rs438742	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[TSI][hapmap]
rs456276	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[TSI][hapmap]
rs457795	1.00[CHB][hapmap]
rs4743972	1.00[CEU][hapmap];0.86[AMR][1000 genomes]
rs4743973	0.86[AMR][1000 genomes]
rs4743975	1.00[CEU][hapmap]
rs4743977	1.00[CEU][hapmap]
rs4744387	0.80[AMR][1000 genomes]
rs4744389	0.97[AMR][1000 genomes]
rs4744402	0.84[AMR][1000 genomes]
rs4744421	1.00[CEU][hapmap]
rs562605	1.00[CHB][hapmap]
rs60120	1.00[CHB][hapmap]
rs6479569	1.00[CHB][hapmap]
rs6479574	1.00[CHB][hapmap]
rs6479576	0.80[AMR][1000 genomes]
rs6479578	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs6479579	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6479581	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes]
rs6479582	0.81[AMR][1000 genomes]
rs6479583	0.81[AMR][1000 genomes]
rs67490803	0.81[AMR][1000 genomes]
rs7019602	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7022963	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs7023719	1.00[CEU][hapmap]
rs7025100	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes]
rs7026714	0.80[AMR][1000 genomes]
rs7029570	0.88[MEX][hapmap];0.85[TSI][hapmap];0.81[AMR][1000 genomes]
rs7030703	0.82[AMR][1000 genomes]
rs7031637	0.85[AMR][1000 genomes]
rs7035166	0.88[MEX][hapmap];0.85[TSI][hapmap];0.80[AMR][1000 genomes]
rs7038519	0.80[AMR][1000 genomes]
rs7038891	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[TSI][hapmap]
rs7044371	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes]
rs7046900	0.81[AMR][1000 genomes]
rs72748601	0.81[AMR][1000 genomes]
rs7852844	0.89[AMR][1000 genomes]
rs7855781	1.00[CHB][hapmap]
rs7864389	0.86[AMR][1000 genomes]
rs7867856	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs7869736	1.00[TSI][hapmap];0.97[AMR][1000 genomes]
rs7870679	0.80[AMR][1000 genomes]
rs894425	1.00[CHB][hapmap]
rs894426	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs894427	0.97[AMR][1000 genomes]
rs894428	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933919	chr9:97619512-97919344	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97633400-97671800	Weak transcription	Esophagus	oesophagus
2	chr9:97638400-97647600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr9:97638600-97661800	Weak transcription	Fetal Intestine Small	intestine
4	chr9:97641000-97647400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr9:97641000-97648600	Enhancers	Fetal Heart	heart
6	chr9:97641000-97650000	Weak transcription	Brain Angular Gyrus	brain
7	chr9:97641200-97647800	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr9:97641400-97647400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr9:97641400-97647400	Weak transcription	Psoas Muscle	Psoas
10	chr9:97641800-97647400	Weak transcription	Hela-S3	cervix
11	chr9:97641800-97647400	Weak transcription	K562	blood
12	chr9:97642800-97648800	Enhancers	Fetal Lung	lung
13	chr9:97643600-97647600	Weak transcription	NHEK	skin
14	chr9:97643800-97647400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr9:97643800-97647400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr9:97644000-97647400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr9:97644000-97647400	Weak transcription	HMEC	breast
18	chr9:97644400-97647400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr9:97644400-97647400	Weak transcription	Ovary	ovary
20	chr9:97644400-97647400	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr9:97644400-97647400	Weak transcription	NHDF-Ad	bronchial
22	chr9:97644400-97647800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr9:97644400-97647800	Weak transcription	Fetal Muscle Leg	muscle
24	chr9:97644400-97652000	Weak transcription	Right Atrium	heart
25	chr9:97644600-97647800	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr9:97644800-97647400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr9:97645400-97648600	Enhancers	HSMMtube	muscle
28	chr9:97645600-97647600	Weak transcription	NH-A	brain
29	chr9:97645600-97647800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr9:97645600-97653200	Weak transcription	Fetal Brain Male	brain
31	chr9:97645800-97647400	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr9:97645800-97647400	Weak transcription	Stomach Smooth Muscle	stomach
33	chr9:97645800-97647800	Weak transcription	Liver	Liver
34	chr9:97646000-97647400	Weak transcription	Fetal Kidney	kidney
35	chr9:97646000-97647400	Weak transcription	Osteobl	bone
36	chr9:97646200-97647400	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr9:97646200-97647400	Weak transcription	Brain Anterior Caudate	brain
38	chr9:97646200-97647400	Weak transcription	HSMM	muscle
39	chr9:97646200-97648000	Enhancers	Gastric	stomach
40	chr9:97646200-97648000	Enhancers	Right Ventricle	heart
41	chr9:97646400-97647400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr9:97646400-97647400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr9:97646400-97647400	Weak transcription	Placenta	Placenta
44	chr9:97646400-97648200	Weak transcription	Brain Hippocampus Middle	brain
45	chr9:97646400-97649800	Weak transcription	Aorta	Aorta
46	chr9:97646600-97647400	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr9:97646600-97648000	Enhancers	Lung	lung
48	chr9:97646600-97648400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr9:97646600-97649800	Weak transcription	Brain Cingulate Gyrus	brain
50	chr9:97646800-97647400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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