Variant report

Variant	rs7852844
Chromosome Location	chr9:97661820-97661821
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr9:97661742-97665053	A549	lung:	n/a	chr9:97663453-97663467 chr9:97662291-97662300 chr9:97665005-97665012
2	TCF12	chr9:97661636-97665228	A549	lung:	n/a	n/a

Variant related genes	Relation type
ENSG00000236095	TF binding region

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10125566	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10217441	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10732407	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10739988	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10739990	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10739991	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10761362	0.89[AMR][1000 genomes]
rs10761363	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10821407	0.80[ASN][1000 genomes]
rs10821411	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10993386	0.97[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1113967	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12554043	0.89[ASN][1000 genomes]
rs1530331	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1542107	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1542108	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2119953	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2406897	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2406898	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2897523	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3847311	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3886568	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3910730	0.86[AMR][1000 genomes]
rs4332191	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4743972	0.81[AMR][1000 genomes]
rs4743973	0.81[AMR][1000 genomes]
rs4744387	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4744389	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6479576	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6479578	0.82[EUR][1000 genomes]
rs6479579	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6479581	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6479582	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6479583	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7019602	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7022963	0.82[EUR][1000 genomes]
rs7025100	0.97[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7025934	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7026714	0.83[ASN][1000 genomes]
rs7029570	0.85[ASN][1000 genomes]
rs7030703	0.91[AFR][1000 genomes]
rs7031637	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs7035166	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7038519	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7044371	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7864389	0.81[AMR][1000 genomes]
rs7867856	0.82[EUR][1000 genomes]
rs7869736	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7870679	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs894426	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs894427	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs894428	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933919	chr9:97619512-97919344	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97633400-97671800	Weak transcription	Esophagus	oesophagus
2	chr9:97653400-97662400	Weak transcription	Fetal Brain Male	brain
3	chr9:97655600-97662400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr9:97655800-97668400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr9:97656000-97662200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr9:97656400-97669000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:97656800-97662200	Weak transcription	HSMM	muscle
8	chr9:97657000-97663800	Weak transcription	Stomach Mucosa	stomach
9	chr9:97657200-97662000	Weak transcription	NH-A	brain
10	chr9:97657200-97662600	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr9:97657200-97662600	Weak transcription	HUVEC	blood vessel
12	chr9:97657400-97662000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr9:97658600-97662400	Enhancers	HepG2	liver
14	chr9:97658800-97662200	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr9:97658800-97662400	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr9:97658800-97668400	Weak transcription	Pancreas	Pancrea
17	chr9:97660800-97702400	Weak transcription	Primary B cells from cord blood	blood
18	chr9:97661000-97666000	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr9:97661600-97686200	Weak transcription	Primary T cells from cord blood	blood
20	chr9:97661800-97662200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr9:97661800-97662200	Enhancers	Muscle Satellite Cultured Cells	--
22	chr9:97661800-97662400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr9:97661800-97662400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr9:97661800-97662400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr9:97661800-97662400	Enhancers	NHDF-Ad	bronchial
26	chr9:97661800-97662400	Enhancers	NHLF	lung
27	chr9:97661800-97662400	Enhancers	Osteobl	bone
28	chr9:97661800-97662600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr9:97661800-97662600	Enhancers	Fetal Intestine Small	intestine
30	chr9:97661800-97662600	Enhancers	Psoas Muscle	Psoas
31	chr9:97661800-97662600	Enhancers	Hela-S3	cervix
32	chr9:97661800-97662600	Enhancers	NHEK	skin
33	chr9:97661800-97662800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr9:97661800-97662800	Enhancers	Liver	Liver
35	chr9:97661800-97662800	Enhancers	Fetal Intestine Large	intestine
36	chr9:97661800-97662800	Enhancers	Ovary	ovary
37	chr9:97661800-97665200	Flanking Active TSS	A549	lung

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