Variant report

Variant	rs7869736
Chromosome Location	chr9:97650128-97650129
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:97647969..97650285-chr9:97681908..97683951,2	MCF-7	breast:
2	chr9:97640769..97645412-chr9:97646279..97650520,7	MCF-7	breast:
3	chr9:97649888..97652305-chr9:97683979..97686393,2	MCF-7	breast:
4	chr9:97648544..97650867-chr9:97765700..97767647,2	MCF-7	breast:
5	chr9:97634943..97636694-chr9:97648278..97650247,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000148120	Chromatin interaction

Extended variants
information (count: 111 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:110)

rs_ID	r²[population]
rs1004813	1.00[JPT][hapmap]
rs10121865	0.81[MKK][hapmap]
rs10125566	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10217441	1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10512252	1.00[JPT][hapmap]
rs10732407	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10739988	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10739990	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10739991	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10761362	1.00[TSI][hapmap];0.97[AMR][1000 genomes]
rs10761363	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10821407	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10821411	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10993386	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1113967	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12551506	0.82[JPT][hapmap];0.84[AMR][1000 genomes]
rs12552838	0.84[AMR][1000 genomes]
rs12554043	0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12555128	1.00[TSI][hapmap]
rs12682668	1.00[JPT][hapmap]
rs12683896	0.84[AMR][1000 genomes]
rs12684072	1.00[JPT][hapmap]
rs12684139	1.00[JPT][hapmap]
rs12684154	1.00[JPT][hapmap]
rs12684461	1.00[JPT][hapmap]
rs12684470	1.00[JPT][hapmap]
rs12684781	1.00[JPT][hapmap]
rs12686277	1.00[JPT][hapmap]
rs12686500	1.00[JPT][hapmap]
rs1530331	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1542107	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1542108	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1571897	1.00[CEU][hapmap];0.87[GIH][hapmap];0.82[JPT][hapmap]
rs16905557	1.00[JPT][hapmap]
rs16911801	1.00[JPT][hapmap]
rs16911802	1.00[JPT][hapmap]
rs16911817	1.00[JPT][hapmap]
rs16911820	1.00[JPT][hapmap]
rs16911821	1.00[JPT][hapmap]
rs16911826	1.00[JPT][hapmap]
rs16911834	0.84[AMR][1000 genomes]
rs1806996	1.00[JPT][hapmap]
rs1904201	0.82[JPT][hapmap];0.81[AMR][1000 genomes]
rs2026399	0.88[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes]
rs2061799	0.81[GIH][hapmap]
rs2078379	1.00[JPT][hapmap]
rs2095069	0.88[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes]
rs2119953	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2165715	0.85[TSI][hapmap]
rs2406897	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2406898	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2584805	0.85[TSI][hapmap]
rs2897523	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs356148	0.85[TSI][hapmap]
rs3824493	1.00[JPT][hapmap]
rs3847309	1.00[JPT][hapmap]
rs3847310	1.00[JPT][hapmap]
rs3847311	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3886567	1.00[JPT][hapmap]
rs3886568	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3887267	0.85[TSI][hapmap]
rs3910730	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs397617	0.84[MKK][hapmap]
rs4332191	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs438742	0.85[TSI][hapmap]
rs4537361	0.81[MKK][hapmap]
rs456276	0.85[TSI][hapmap]
rs4743972	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4743973	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4743976	1.00[CEU][hapmap];0.81[GIH][hapmap];0.82[JPT][hapmap]
rs4744387	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4744389	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4744402	0.86[AMR][1000 genomes]
rs6479568	1.00[JPT][hapmap]
rs6479576	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6479578	1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6479579	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6479581	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6479582	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6479583	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6479589	1.00[CEU][hapmap]
rs66993340	0.81[AMR][1000 genomes]
rs67490803	0.84[AMR][1000 genomes]
rs7019602	1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7022739	1.00[CEU][hapmap];0.81[GIH][hapmap]
rs7022963	1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs7025100	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7025934	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7026714	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7029570	0.88[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.85[TSI][hapmap];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7030703	0.84[AMR][1000 genomes]
rs7031637	0.88[AMR][1000 genomes]
rs7035166	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7038519	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7038891	0.85[TSI][hapmap]
rs7044371	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7045005	1.00[JPT][hapmap]
rs7046900	0.84[AMR][1000 genomes]
rs72748601	0.84[AMR][1000 genomes]
rs7465900	1.00[JPT][hapmap]
rs7850601	1.00[JPT][hapmap]
rs7850680	1.00[JPT][hapmap]
rs7852844	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7853126	0.84[MKK][hapmap]
rs7864389	0.89[AMR][1000 genomes]
rs7867856	1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7870679	1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs894426	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs894427	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs894428	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933919	chr9:97619512-97919344	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97633400-97671800	Weak transcription	Esophagus	oesophagus
2	chr9:97638600-97661800	Weak transcription	Fetal Intestine Small	intestine
3	chr9:97644400-97652000	Weak transcription	Right Atrium	heart
4	chr9:97645600-97653200	Weak transcription	Fetal Brain Male	brain
5	chr9:97648000-97652800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr9:97648000-97652800	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr9:97648000-97657400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr9:97648200-97650200	Weak transcription	NHLF	lung
9	chr9:97648400-97653000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr9:97648400-97656400	Weak transcription	NH-A	brain
11	chr9:97648400-97657400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr9:97648600-97651800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr9:97648600-97652000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr9:97648600-97653400	Weak transcription	Brain Hippocampus Middle	brain
15	chr9:97648600-97654600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr9:97648600-97654600	Weak transcription	Pancreas	Pancrea
17	chr9:97648600-97654800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr9:97648600-97656000	Weak transcription	Liver	Liver
19	chr9:97648800-97652600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr9:97648800-97652800	Weak transcription	Fetal Lung	lung
21	chr9:97648800-97653200	Weak transcription	HSMM	muscle
22	chr9:97649800-97650200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr9:97649800-97650200	Enhancers	Brain Inferior Temporal Lobe	brain
24	chr9:97649800-97650200	Enhancers	Brain Substantia Nigra	brain
25	chr9:97649800-97650200	Enhancers	Gastric	stomach
26	chr9:97649800-97650200	Flanking Active TSS	A549	lung
27	chr9:97649800-97650400	Enhancers	Brain Cingulate Gyrus	brain
28	chr9:97649800-97650400	Enhancers	HepG2	liver
29	chr9:97649800-97650400	Enhancers	Osteobl	bone
30	chr9:97649800-97650600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr9:97649800-97650600	Enhancers	Muscle Satellite Cultured Cells	--
32	chr9:97649800-97650600	Enhancers	NHDF-Ad	bronchial
33	chr9:97649800-97651000	Enhancers	Hela-S3	cervix
34	chr9:97650000-97650200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr9:97650000-97650200	Enhancers	Brain Anterior Caudate	brain
36	chr9:97650000-97650200	Enhancers	HSMMtube	muscle
37	chr9:97650000-97650400	Enhancers	Brain Angular Gyrus	brain
38	chr9:97650000-97650400	Enhancers	Stomach Mucosa	stomach

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