Variant report

Variant	rs7035166
Chromosome Location	chr9:97612840-97612841
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97601155..97603173-chr9:97612661..97615155,2	MCF-7	breast:
2	chr9:97605983..97614028-chr9:97679391..97685424,7	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C9orf118-1	chr9:97608191-97616025	refGeneNc_2054_NR_023390

Variant related genes	Relation type
ENSG00000148120	Chromatin interaction

Extended variants
information (count: 183 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:183)

rs_ID	r²[population]
rs1004813	1.00[JPT][hapmap]
rs10121865	0.88[ASW][hapmap];1.00[LWK][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs10125566	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10217441	0.85[TSI][hapmap];0.83[AMR][1000 genomes]
rs10512252	1.00[JPT][hapmap]
rs10732406	0.83[AFR][1000 genomes]
rs10732407	0.83[AMR][1000 genomes]
rs10733755	0.83[AFR][1000 genomes]
rs10733756	0.89[EUR][1000 genomes]
rs10739988	0.83[AMR][1000 genomes]
rs10739990	0.83[AMR][1000 genomes]
rs10739991	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10761355	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs10761359	0.94[AFR][1000 genomes]
rs10761360	0.81[EUR][1000 genomes]
rs10761362	0.88[MEX][hapmap];0.85[TSI][hapmap];0.80[AMR][1000 genomes]
rs10821407	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10821411	0.83[AMR][1000 genomes]
rs10993351	0.87[LWK][hapmap];0.81[MKK][hapmap];0.86[YRI][hapmap]
rs1113967	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1228614	0.90[YRI][hapmap]
rs12339275	0.86[YRI][hapmap]
rs12344537	0.92[LWK][hapmap];0.86[YRI][hapmap]
rs12352276	0.86[YRI][hapmap]
rs12551506	0.82[JPT][hapmap]
rs12553916	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12554043	0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap]
rs12555128	0.88[MEX][hapmap];0.85[TSI][hapmap]
rs12682668	1.00[JPT][hapmap]
rs12684072	1.00[JPT][hapmap]
rs12684139	1.00[JPT][hapmap]
rs12684154	1.00[JPT][hapmap]
rs12684461	1.00[JPT][hapmap]
rs12684470	1.00[JPT][hapmap]
rs12684703	0.86[YRI][hapmap]
rs12684781	1.00[JPT][hapmap]
rs12686277	1.00[JPT][hapmap]
rs12686500	1.00[JPT][hapmap]
rs13285343	0.90[YRI][hapmap]
rs1530331	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1542107	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.85[TSI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1571897	0.87[GIH][hapmap];0.82[JPT][hapmap]
rs16905557	1.00[JPT][hapmap]
rs16911661	0.81[MKK][hapmap];0.86[YRI][hapmap]
rs16911801	1.00[JPT][hapmap]
rs16911802	1.00[JPT][hapmap]
rs16911817	1.00[JPT][hapmap]
rs16911820	1.00[JPT][hapmap]
rs16911821	1.00[JPT][hapmap]
rs16911826	1.00[JPT][hapmap]
rs17355875	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1806996	1.00[JPT][hapmap]
rs1808905	0.92[AFR][1000 genomes]
rs187163	1.00[YRI][hapmap]
rs1904201	0.82[JPT][hapmap]
rs191654	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2026399	0.88[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.85[TSI][hapmap]
rs2061799	0.81[GIH][hapmap]
rs2078379	1.00[JPT][hapmap]
rs2095069	0.88[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap]
rs2099868	0.87[EUR][1000 genomes]
rs2119953	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2165715	1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2406897	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2406898	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.85[TSI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs242259	0.90[YRI][hapmap]
rs242260	0.83[AMR][1000 genomes]
rs2584803	0.89[LWK][hapmap];0.84[MKK][hapmap];0.90[YRI][hapmap]
rs2584805	0.88[MEX][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs2675168	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2767403	0.92[LWK][hapmap];0.84[MKK][hapmap];0.90[YRI][hapmap]
rs2767404	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs2897523	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs356122	0.91[LWK][hapmap];0.84[MKK][hapmap];0.90[YRI][hapmap]
rs356123	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs356124	0.90[YRI][hapmap]
rs356125	0.87[EUR][1000 genomes]
rs356127	0.88[LWK][hapmap];0.84[MKK][hapmap];0.90[YRI][hapmap]
rs356128	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs356130	0.91[LWK][hapmap];0.80[MKK][hapmap];0.90[YRI][hapmap]
rs356132	0.87[EUR][1000 genomes]
rs356133	0.87[EUR][1000 genomes]
rs356134	0.90[YRI][hapmap]
rs356136	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs356137	0.92[LWK][hapmap];0.84[MKK][hapmap];0.90[YRI][hapmap]
rs356139	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs356140	0.96[YRI][hapmap]
rs356143	0.92[LWK][hapmap];0.84[MKK][hapmap];0.90[YRI][hapmap]
rs356145	0.87[EUR][1000 genomes]
rs356146	0.90[YRI][hapmap]
rs356147	0.87[EUR][1000 genomes]
rs356148	0.88[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs356149	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs365465	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs367319	0.87[EUR][1000 genomes]
rs380205	0.92[LWK][hapmap];0.86[MKK][hapmap];0.90[YRI][hapmap]
rs3824493	1.00[JPT][hapmap]
rs3847309	1.00[JPT][hapmap]
rs3847310	1.00[JPT][hapmap]
rs3847311	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3858087	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs3886567	1.00[JPT][hapmap]
rs3886568	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.85[TSI][hapmap];0.80[YRI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3887267	0.88[MEX][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs389365	0.86[YRI][hapmap]
rs396538	0.92[LWK][hapmap];0.86[YRI][hapmap]
rs397617	0.88[ASW][hapmap];1.00[LWK][hapmap];0.95[MKK][hapmap];0.96[YRI][hapmap]
rs397783	0.80[AMR][1000 genomes]
rs397806	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs400231	1.00[YRI][hapmap]
rs418764	0.90[YRI][hapmap]
rs422502	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4332191	0.83[AMR][1000 genomes]
rs438742	0.88[MEX][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs439052	0.90[YRI][hapmap]
rs4437717	0.86[YRI][hapmap]
rs448899	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4537361	0.88[ASW][hapmap];1.00[LWK][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs456276	1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs457795	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4612413	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs471161	0.88[ASW][hapmap];1.00[LWK][hapmap];0.81[MKK][hapmap];0.96[YRI][hapmap]
rs4743968	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4743970	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4743976	0.81[GIH][hapmap];0.82[JPT][hapmap]
rs4744377	0.90[YRI][hapmap]
rs4744382	0.87[EUR][1000 genomes]
rs4744387	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4744388	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4744389	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs555799	0.84[EUR][1000 genomes]
rs55914113	0.94[AFR][1000 genomes]
rs55926255	0.83[AFR][1000 genomes]
rs56198429	0.81[EUR][1000 genomes]
rs562605	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56317174	0.81[EUR][1000 genomes]
rs56965843	0.88[EUR][1000 genomes]
rs58281499	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs60120	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6479568	1.00[JPT][hapmap]
rs6479569	0.87[EUR][1000 genomes]
rs6479575	0.87[EUR][1000 genomes]
rs6479576	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6479577	0.88[AMR][1000 genomes]
rs6479578	0.88[MEX][hapmap];0.85[TSI][hapmap]
rs6479581	0.83[AMR][1000 genomes]
rs66495734	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs66710673	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs67208365	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs68090960	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs68091393	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7019602	1.00[MEX][hapmap];0.85[TSI][hapmap];0.83[AMR][1000 genomes]
rs7022739	0.81[GIH][hapmap]
rs7022963	0.88[MEX][hapmap];0.85[TSI][hapmap]
rs7025234	0.83[AFR][1000 genomes]
rs7025934	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7026714	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7029570	0.88[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap]
rs7038519	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7038891	0.88[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7044371	0.83[AMR][1000 genomes]
rs7045005	1.00[JPT][hapmap]
rs7047478	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72747019	0.81[EUR][1000 genomes]
rs732141	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs7341710	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7465900	1.00[JPT][hapmap]
rs7850601	1.00[JPT][hapmap]
rs7850680	1.00[JPT][hapmap]
rs7852844	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7853126	0.88[ASW][hapmap];1.00[LWK][hapmap];0.95[MKK][hapmap];0.96[YRI][hapmap]
rs7855781	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7861358	0.90[YRI][hapmap]
rs7864389	0.83[AMR][1000 genomes]
rs7867856	0.88[MEX][hapmap];0.85[TSI][hapmap]
rs7869736	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7870679	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7871979	0.87[AFR][1000 genomes]
rs894426	0.83[AMR][1000 genomes]
rs894427	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs894428	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9409589	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9409805	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97571800-97622600	Weak transcription	Primary B cells from cord blood	blood
2	chr9:97589200-97622400	Weak transcription	Aorta	Aorta
3	chr9:97590600-97616000	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr9:97602400-97616000	Weak transcription	Fetal Intestine Small	intestine
5	chr9:97602400-97620200	Weak transcription	GM12878-XiMat	blood
6	chr9:97602400-97622200	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr9:97603000-97614600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr9:97603200-97624600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr9:97605600-97622600	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr9:97605800-97621800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr9:97605800-97626000	Weak transcription	Right Atrium	heart
12	chr9:97609800-97614600	Weak transcription	Left Ventricle	heart
13	chr9:97609800-97618400	Weak transcription	Lung	lung
14	chr9:97609800-97620600	Weak transcription	Fetal Stomach	stomach
15	chr9:97609800-97623800	Weak transcription	Fetal Muscle Trunk	muscle
16	chr9:97610200-97613000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr9:97610200-97613200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr9:97610200-97613800	Weak transcription	HepG2	liver
19	chr9:97610200-97623200	Weak transcription	Fetal Intestine Large	intestine
20	chr9:97610200-97625800	Weak transcription	Right Ventricle	heart
21	chr9:97610400-97613200	Weak transcription	Esophagus	oesophagus
22	chr9:97610400-97615600	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr9:97610400-97615800	Weak transcription	Stomach Mucosa	stomach
24	chr9:97610400-97615800	Weak transcription	HMEC	breast
25	chr9:97610400-97615800	Weak transcription	NHEK	skin
26	chr9:97610400-97620400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr9:97610400-97622400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr9:97610400-97623600	Weak transcription	Fetal Kidney	kidney
29	chr9:97610600-97613400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr9:97610600-97614200	Weak transcription	Pancreas	Pancrea
31	chr9:97610600-97614600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr9:97610600-97615800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr9:97610600-97616000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr9:97610600-97616000	Weak transcription	NH-A	brain
35	chr9:97610600-97616000	Weak transcription	Osteobl	bone
36	chr9:97610600-97620400	Weak transcription	Fetal Muscle Leg	muscle
37	chr9:97610600-97622200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr9:97610600-97623000	Weak transcription	NHLF	lung
39	chr9:97611000-97615800	Weak transcription	HSMM	muscle
40	chr9:97611200-97622600	Weak transcription	Primary hematopoietic stem cells	blood
41	chr9:97611400-97620800	Weak transcription	Placenta	Placenta
42	chr9:97612000-97614600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr9:97612000-97627600	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr9:97612600-97613200	Enhancers	Muscle Satellite Cultured Cells	--
45	chr9:97612600-97613400	Enhancers	A549	lung
46	chr9:97612600-97613600	Enhancers	HSMMtube	muscle
47	chr9:97612600-97614800	Strong transcription	Primary T cells from cord blood	blood
48	chr9:97612600-97614800	Enhancers	Brain Hippocampus Middle	brain
49	chr9:97612600-97614800	Enhancers	Brain Inferior Temporal Lobe	brain
50	chr9:97612600-97615000	Enhancers	NHDF-Ad	bronchial

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