Variant report

Variant	rs56965843
Chromosome Location	chr9:97480783-97480784
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10821407	0.83[EUR][1000 genomes]
rs12553916	0.80[EUR][1000 genomes]
rs1530331	0.88[EUR][1000 genomes]
rs17355875	0.80[EUR][1000 genomes]
rs1810772	0.90[AFR][1000 genomes]
rs2675168	0.80[EUR][1000 genomes]
rs3887267	0.80[EUR][1000 genomes]
rs397806	0.80[EUR][1000 genomes]
rs422502	0.80[EUR][1000 genomes]
rs4612413	0.80[EUR][1000 genomes]
rs4744387	0.88[EUR][1000 genomes]
rs56198429	0.80[EUR][1000 genomes]
rs56317174	0.80[EUR][1000 genomes]
rs58281499	0.80[EUR][1000 genomes]
rs6479565	0.91[AFR][1000 genomes]
rs6479576	0.88[EUR][1000 genomes]
rs66495734	0.80[EUR][1000 genomes]
rs66710673	0.80[EUR][1000 genomes]
rs68091393	0.80[EUR][1000 genomes]
rs7025934	0.88[EUR][1000 genomes]
rs7026714	0.83[EUR][1000 genomes]
rs7035166	0.88[EUR][1000 genomes]
rs7037510	0.83[AFR][1000 genomes]
rs7038519	0.88[EUR][1000 genomes]
rs7041982	0.80[AFR][1000 genomes]
rs72747019	0.80[EUR][1000 genomes]
rs7870679	0.88[EUR][1000 genomes]
rs894428	0.88[EUR][1000 genomes]
rs913182	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1041922	chr9:97444976-97536753	Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97479000-97483200	Weak transcription	HepG2	liver
2	chr9:97479000-97488400	Weak transcription	Fetal Intestine Large	intestine
3	chr9:97480000-97483400	Enhancers	Placenta	Placenta
4	chr9:97480000-97483800	Enhancers	NHEK	skin
5	chr9:97480000-97484200	Enhancers	HMEC	breast
6	chr9:97480200-97481400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr9:97480400-97481400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr9:97480400-97484200	Weak transcription	NHDF-Ad	bronchial
9	chr9:97480600-97482000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr9:97480600-97482200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links