Variant report

Variant	rs1810772
Chromosome Location	chr9:97477177-97477178
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97476575..97480108-chr9:97483463..97488738,5	MCF-7	breast:

Extended variants
information (count: 97 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs10121865	0.92[EUR][1000 genomes]
rs10122127	0.86[EUR][1000 genomes]
rs10217427	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10732405	0.86[EUR][1000 genomes]
rs10732406	0.92[EUR][1000 genomes]
rs10733755	0.92[EUR][1000 genomes]
rs10739986	0.84[EUR][1000 genomes]
rs10761355	0.92[EUR][1000 genomes]
rs10821405	0.84[EUR][1000 genomes]
rs10993348	0.86[EUR][1000 genomes]
rs1228614	0.92[EUR][1000 genomes]
rs12339275	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12340251	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12344537	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12352276	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12553690	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12684703	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13285343	0.92[EUR][1000 genomes]
rs16911661	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs181488	0.86[EUR][1000 genomes]
rs187163	0.92[EUR][1000 genomes]
rs193292	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2119954	0.86[EUR][1000 genomes]
rs2165716	0.92[EUR][1000 genomes]
rs2304884	0.86[EUR][1000 genomes]
rs2406899	0.86[EUR][1000 genomes]
rs242259	0.86[EUR][1000 genomes]
rs2584803	0.91[EUR][1000 genomes]
rs2584804	0.86[EUR][1000 genomes]
rs2767403	0.92[EUR][1000 genomes]
rs2767404	0.92[EUR][1000 genomes]
rs28647286	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34940574	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs356122	0.92[EUR][1000 genomes]
rs356123	0.92[EUR][1000 genomes]
rs356124	0.92[EUR][1000 genomes]
rs356126	0.92[EUR][1000 genomes]
rs356127	0.92[EUR][1000 genomes]
rs356129	0.87[EUR][1000 genomes]
rs356130	0.92[EUR][1000 genomes]
rs356134	0.92[EUR][1000 genomes]
rs356135	0.86[EUR][1000 genomes]
rs356137	0.92[EUR][1000 genomes]
rs356138	0.92[EUR][1000 genomes]
rs356140	0.92[EUR][1000 genomes]
rs356142	0.86[EUR][1000 genomes]
rs356143	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs356146	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs374708	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs376902	0.86[EUR][1000 genomes]
rs380205	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs384039	0.86[EUR][1000 genomes]
rs3858087	0.92[EUR][1000 genomes]
rs3858088	0.92[EUR][1000 genomes]
rs389365	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs396538	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs397617	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs400231	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs405110	0.92[EUR][1000 genomes]
rs415016	0.86[EUR][1000 genomes]
rs418764	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs439052	0.92[EUR][1000 genomes]
rs4437717	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4537361	0.92[EUR][1000 genomes]
rs471161	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4744377	0.92[EUR][1000 genomes]
rs4744379	0.86[EUR][1000 genomes]
rs4744380	0.86[EUR][1000 genomes]
rs4744383	0.83[EUR][1000 genomes]
rs55795862	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55914113	0.88[EUR][1000 genomes]
rs55926255	0.92[EUR][1000 genomes]
rs56965843	0.90[AFR][1000 genomes]
rs57504746	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs58042095	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6479565	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6479570	0.86[EUR][1000 genomes]
rs6479571	0.86[EUR][1000 genomes]
rs6479572	0.86[EUR][1000 genomes]
rs6479574	0.86[EUR][1000 genomes]
rs672012	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs67625382	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7025234	0.92[EUR][1000 genomes]
rs7028317	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7030617	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7031172	0.86[EUR][1000 genomes]
rs7041982	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7045387	0.86[EUR][1000 genomes]
rs7047864	0.91[EUR][1000 genomes]
rs732141	0.91[EUR][1000 genomes]
rs7853126	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7861358	0.92[EUR][1000 genomes]
rs7862700	0.92[EUR][1000 genomes]
rs913182	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9409806	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1041922	chr9:97444976-97536753	Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1810772	hCG_2003663	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97476200-97480000	Weak transcription	Placenta	Placenta
2	chr9:97476600-97477800	Enhancers	Fetal Brain Male	brain
3	chr9:97476800-97480200	Weak transcription	NHDF-Ad	bronchial

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