Variant report

Variant	rs7870679
Chromosome Location	chr9:97620741-97620742
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97619201..97621520-chr9:97626417..97628990,2	K562	blood:
2	chr9:97619538..97621584-chr9:97627252..97629069,2	K562	blood:

Extended variants
information (count: 181 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:180)

rs_ID	r²[population]
rs1004813	1.00[JPT][hapmap]
rs10121865	0.90[YRI][hapmap];0.83[AFR][1000 genomes]
rs10125566	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10217441	0.83[AMR][1000 genomes]
rs10512252	1.00[JPT][hapmap]
rs10732406	0.94[AFR][1000 genomes]
rs10732407	0.83[AMR][1000 genomes]
rs10733755	0.94[AFR][1000 genomes]
rs10733756	0.89[EUR][1000 genomes]
rs10739988	0.83[AMR][1000 genomes]
rs10739990	0.83[AMR][1000 genomes]
rs10739991	1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10761355	0.88[YRI][hapmap]
rs10761359	0.83[AFR][1000 genomes]
rs10761360	0.81[EUR][1000 genomes]
rs10761362	0.80[AMR][1000 genomes]
rs10821407	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10821411	0.83[AMR][1000 genomes]
rs10993351	0.96[YRI][hapmap]
rs1113967	1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1228614	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs12339275	0.97[YRI][hapmap]
rs12344537	0.96[YRI][hapmap]
rs12352276	0.97[YRI][hapmap]
rs12551506	0.82[JPT][hapmap]
rs12553916	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12554043	1.00[JPT][hapmap]
rs12682668	1.00[JPT][hapmap]
rs12684072	1.00[JPT][hapmap]
rs12684139	1.00[JPT][hapmap]
rs12684154	1.00[JPT][hapmap]
rs12684461	1.00[JPT][hapmap]
rs12684470	1.00[JPT][hapmap]
rs12684703	0.97[YRI][hapmap]
rs12684781	1.00[JPT][hapmap]
rs12686277	1.00[JPT][hapmap]
rs12686500	1.00[JPT][hapmap]
rs13285343	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs1530331	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1542107	1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1571897	0.82[JPT][hapmap]
rs16905557	1.00[JPT][hapmap]
rs16911661	0.96[YRI][hapmap]
rs16911801	1.00[JPT][hapmap]
rs16911802	1.00[JPT][hapmap]
rs16911817	1.00[JPT][hapmap]
rs16911820	1.00[JPT][hapmap]
rs16911821	1.00[JPT][hapmap]
rs16911826	1.00[JPT][hapmap]
rs17355875	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1806996	1.00[JPT][hapmap]
rs1808905	0.81[AFR][1000 genomes]
rs187163	0.88[YRI][hapmap]
rs1904201	0.82[JPT][hapmap]
rs191654	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2026399	0.82[JPT][hapmap]
rs2078379	1.00[JPT][hapmap]
rs2095069	0.82[JPT][hapmap]
rs2099868	0.87[EUR][1000 genomes]
rs2119953	1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2165715	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2165716	0.84[AFR][1000 genomes]
rs2406897	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2406898	1.00[JPT][hapmap];0.83[YRI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs242259	1.00[YRI][hapmap]
rs242260	0.83[AMR][1000 genomes]
rs2584803	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs2584805	0.87[EUR][1000 genomes]
rs2675168	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2767403	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs2767404	0.87[YRI][hapmap]
rs2897523	1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs356122	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs356123	0.88[YRI][hapmap]
rs356124	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs356125	0.87[EUR][1000 genomes]
rs356126	0.84[AFR][1000 genomes]
rs356127	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs356128	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs356130	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs356132	0.87[EUR][1000 genomes]
rs356133	0.87[EUR][1000 genomes]
rs356134	1.00[YRI][hapmap]
rs356136	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs356137	1.00[YRI][hapmap]
rs356139	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs356140	0.82[YRI][hapmap]
rs356143	1.00[YRI][hapmap]
rs356145	0.87[EUR][1000 genomes]
rs356146	1.00[YRI][hapmap]
rs356147	0.87[EUR][1000 genomes]
rs356148	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs356149	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs365465	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs367319	0.87[EUR][1000 genomes]
rs380205	1.00[YRI][hapmap]
rs3824493	1.00[JPT][hapmap]
rs3847309	1.00[JPT][hapmap]
rs3847310	1.00[JPT][hapmap]
rs3847311	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3858087	0.88[YRI][hapmap]
rs3858088	0.88[YRI][hapmap]
rs3886567	1.00[JPT][hapmap]
rs3886568	1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3887267	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs389365	0.97[YRI][hapmap]
rs396538	0.96[YRI][hapmap]
rs397617	0.86[YRI][hapmap]
rs397783	0.80[AMR][1000 genomes]
rs397806	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs400231	0.88[YRI][hapmap]
rs418764	1.00[YRI][hapmap]
rs422502	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4332191	0.83[AMR][1000 genomes]
rs438742	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs439052	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs4437717	0.97[YRI][hapmap]
rs448899	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4537361	0.90[YRI][hapmap]
rs456276	0.87[EUR][1000 genomes]
rs457795	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4612413	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs471161	0.86[YRI][hapmap]
rs4743968	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4743970	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4744377	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs4744382	0.87[EUR][1000 genomes]
rs4744387	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4744388	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4744389	1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs555799	0.84[EUR][1000 genomes]
rs55914113	0.83[AFR][1000 genomes]
rs55926255	0.94[AFR][1000 genomes]
rs56198429	0.81[EUR][1000 genomes]
rs562605	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56317174	0.81[EUR][1000 genomes]
rs56965843	0.88[EUR][1000 genomes]
rs58281499	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs60120	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6479568	1.00[JPT][hapmap]
rs6479569	0.87[EUR][1000 genomes]
rs6479575	0.87[EUR][1000 genomes]
rs6479576	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6479577	0.88[AMR][1000 genomes]
rs6479581	0.83[AMR][1000 genomes]
rs66495734	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs66710673	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs67208365	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs68090960	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs68091393	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7019602	0.83[AMR][1000 genomes]
rs7025234	0.94[AFR][1000 genomes]
rs7025934	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7026714	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7029570	0.82[JPT][hapmap]
rs7035166	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7037652	0.80[AFR][1000 genomes]
rs7038519	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7038891	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7044371	0.83[AMR][1000 genomes]
rs7045005	1.00[JPT][hapmap]
rs7047478	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72747019	0.81[EUR][1000 genomes]
rs732141	0.88[YRI][hapmap]
rs7341710	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7465900	1.00[JPT][hapmap]
rs7850601	1.00[JPT][hapmap]
rs7850680	1.00[JPT][hapmap]
rs7852844	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7853126	0.86[YRI][hapmap]
rs7855781	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7861358	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs7862700	0.88[YRI][hapmap]
rs7864389	0.83[AMR][1000 genomes]
rs7869736	1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs894426	0.83[AMR][1000 genomes]
rs894427	1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs894428	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9409589	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9409805	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933919	chr9:97619512-97919344	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97571800-97622600	Weak transcription	Primary B cells from cord blood	blood
2	chr9:97589200-97622400	Weak transcription	Aorta	Aorta
3	chr9:97602400-97622200	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr9:97603200-97624600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr9:97605600-97622600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr9:97605800-97621800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr9:97605800-97626000	Weak transcription	Right Atrium	heart
8	chr9:97609800-97623800	Weak transcription	Fetal Muscle Trunk	muscle
9	chr9:97610200-97623200	Weak transcription	Fetal Intestine Large	intestine
10	chr9:97610200-97625800	Weak transcription	Right Ventricle	heart
11	chr9:97610400-97622400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr9:97610400-97623600	Weak transcription	Fetal Kidney	kidney
13	chr9:97610600-97622200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr9:97610600-97623000	Weak transcription	NHLF	lung
15	chr9:97611200-97622600	Weak transcription	Primary hematopoietic stem cells	blood
16	chr9:97611400-97620800	Weak transcription	Placenta	Placenta
17	chr9:97612000-97627600	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr9:97612800-97626200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr9:97614000-97627800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr9:97614800-97622400	Weak transcription	Primary T cells from cord blood	blood
21	chr9:97614800-97623400	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr9:97614800-97623400	Weak transcription	Esophagus	oesophagus
23	chr9:97615000-97622600	Weak transcription	HSMMtube	muscle
24	chr9:97615000-97622800	Weak transcription	NHDF-Ad	bronchial
25	chr9:97615000-97623200	Weak transcription	Pancreas	Pancrea
26	chr9:97615000-97623200	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr9:97616200-97623600	Weak transcription	Fetal Lung	lung
28	chr9:97616400-97622600	Weak transcription	Osteobl	bone
29	chr9:97616400-97623200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr9:97616400-97623400	Weak transcription	Brain Angular Gyrus	brain
31	chr9:97616600-97621400	Weak transcription	Brain Hippocampus Middle	brain
32	chr9:97616600-97629600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr9:97616800-97622600	Weak transcription	NH-A	brain
34	chr9:97616800-97623200	Weak transcription	Brain Cingulate Gyrus	brain
35	chr9:97616800-97623400	Weak transcription	Stomach Mucosa	stomach
36	chr9:97617000-97627600	Weak transcription	Adipose Nuclei	Adipose
37	chr9:97617200-97623200	Weak transcription	HepG2	liver
38	chr9:97618400-97622400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr9:97618600-97623200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr9:97618600-97628400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr9:97619400-97621600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr9:97619800-97622200	Weak transcription	Primary T helper cells fromperipheralblood	blood
43	chr9:97619800-97623000	Weak transcription	Monocytes-CD14+_RO01746	blood
44	chr9:97620200-97620800	ZNF genes & repeats	GM12878-XiMat	blood
45	chr9:97620400-97621000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr9:97620400-97621000	ZNF genes & repeats	Fetal Muscle Leg	muscle
47	chr9:97620600-97620800	ZNF genes & repeats	HSMM	muscle
48	chr9:97620600-97621000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr9:97620600-97621000	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr9:97620600-97621000	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung

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