Variant report

Variant	rs7038891
Chromosome Location	chr9:97592871-97592872
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97591718..97593908-chr9:97672689..97674656,2	MCF-7	breast:
2	chr9:97591789..97593682-chr9:97596295..97598175,2	K562	blood:

Extended variants
information (count: 114 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:112)

rs_ID	r²[population]
rs10217441	1.00[CHB][hapmap];1.00[GIH][hapmap];0.85[TSI][hapmap];0.85[EUR][1000 genomes]
rs10732407	1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs10733756	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10739988	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10739990	0.85[EUR][1000 genomes]
rs10761360	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10761362	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[TSI][hapmap]
rs10761363	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs10821407	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10821411	0.85[EUR][1000 genomes]
rs10993386	0.85[EUR][1000 genomes]
rs12553916	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12554043	0.88[MEX][hapmap];0.85[TSI][hapmap]
rs12555128	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap]
rs1382411	0.83[AFR][1000 genomes]
rs1382412	0.83[AFR][1000 genomes]
rs1530331	0.88[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1542107	0.88[MEX][hapmap];0.85[TSI][hapmap]
rs1542108	1.00[CHB][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs17355875	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs191654	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2026399	0.88[MEX][hapmap];0.85[TSI][hapmap]
rs2095069	0.88[MEX][hapmap];0.85[TSI][hapmap]
rs2099868	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2165715	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2406898	0.85[TSI][hapmap]
rs242260	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2584805	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2675168	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs356125	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs356128	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs356132	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs356133	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs356136	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs356139	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs356145	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs356147	1.00[CHB][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs356148	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs356149	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs365465	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs367319	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3886568	0.88[MEX][hapmap];0.85[TSI][hapmap]
rs3887267	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3910730	0.88[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs397783	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes]
rs397806	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs41316526	0.83[AFR][1000 genomes]
rs422502	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4332191	1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs438742	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs448899	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs456276	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs457795	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4612413	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4743968	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4743970	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4743972	0.88[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs4743973	0.88[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs4744382	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4744387	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4744388	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4744402	0.81[AFR][1000 genomes]
rs555799	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56198429	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs562605	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56317174	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58281499	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs60120	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60553517	0.87[AFR][1000 genomes]
rs61086657	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6479569	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6479574	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6479575	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6479576	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6479577	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6479578	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6479579	0.96[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6479581	0.85[EUR][1000 genomes]
rs6479582	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6479583	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs66495734	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs66642068	0.83[AFR][1000 genomes]
rs66710673	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs66863985	0.83[AFR][1000 genomes]
rs67208365	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs68090960	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs68091393	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7019602	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];0.85[TSI][hapmap];0.85[EUR][1000 genomes]
rs7022963	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.85[EUR][1000 genomes]
rs7025100	1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs7025934	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7026714	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7029570	0.88[MEX][hapmap]
rs7035166	0.88[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7038519	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7044371	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7047478	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72747019	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7341710	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73532355	0.87[AFR][1000 genomes]
rs73536067	0.87[AFR][1000 genomes]
rs73536074	0.87[AFR][1000 genomes]
rs73538177	0.83[AFR][1000 genomes]
rs7855781	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7867856	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.85[EUR][1000 genomes]
rs7869736	0.85[TSI][hapmap]
rs7870679	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs894425	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs894426	0.85[EUR][1000 genomes]
rs894428	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9409589	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9409805	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	esv3344137	chr9:97590602-97594805	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97563600-97594400	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr9:97567400-97593400	Weak transcription	Thymus	Thymus
3	chr9:97570000-97594400	Weak transcription	Dnd41	blood
4	chr9:97570000-97601400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr9:97571800-97622600	Weak transcription	Primary B cells from cord blood	blood
6	chr9:97572000-97601600	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr9:97572600-97593600	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr9:97580600-97600200	Weak transcription	Primary hematopoietic stem cells	blood
9	chr9:97581800-97609600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr9:97582000-97599400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr9:97582200-97594000	Weak transcription	NHEK	skin
12	chr9:97584200-97593800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr9:97585000-97609600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr9:97589200-97598800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr9:97589200-97600400	Weak transcription	Primary T cells from cord blood	blood
16	chr9:97589200-97602000	Weak transcription	Lung	lung
17	chr9:97589200-97605400	Weak transcription	Spleen	Spleen
18	chr9:97589200-97609400	Weak transcription	Pancreas	Pancrea
19	chr9:97589200-97622400	Weak transcription	Aorta	Aorta
20	chr9:97589400-97598600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr9:97590000-97596600	Weak transcription	Fetal Heart	heart
22	chr9:97590200-97596800	Weak transcription	Fetal Intestine Small	intestine
23	chr9:97590400-97598600	Weak transcription	Fetal Intestine Large	intestine
24	chr9:97590400-97602000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr9:97590600-97609600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr9:97590600-97616000	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr9:97591000-97593200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr9:97591000-97595800	Weak transcription	Liver	Liver
29	chr9:97591000-97609200	Weak transcription	Osteobl	bone
30	chr9:97592000-97597000	Weak transcription	HepG2	liver
31	chr9:97592200-97594600	Weak transcription	Hela-S3	cervix
32	chr9:97592200-97594600	Weak transcription	HSMM	muscle
33	chr9:97592200-97599800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr9:97592200-97608400	Weak transcription	HSMMtube	muscle
35	chr9:97592200-97609400	Weak transcription	NHDF-Ad	bronchial
36	chr9:97592600-97599200	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr9:97592800-97594200	Weak transcription	GM12878-XiMat	blood

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