Variant report

Variant	rs68090960
Chromosome Location	chr9:97530377-97530378
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:97525737..97528052-chr9:97529535..97531764,2	K562	blood:
2	chr9:97529861..97533578-chr9:97534032..97536715,3	K562	blood:
3	chr9:97529221..97532775-chr9:97533309..97537011,4	K562	blood:
4	chr9:97529158..97531102-chr9:97866148..97868747,2	MCF-7	breast:
5	chr9:97524321..97526027-chr9:97528891..97531029,2	K562	blood:

Extended variants
information (count: 103 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs10217441	0.85[EUR][1000 genomes]
rs10732407	0.85[EUR][1000 genomes]
rs10733756	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10739988	0.85[EUR][1000 genomes]
rs10739990	0.85[EUR][1000 genomes]
rs10761360	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10761363	0.96[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs10821407	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10821411	0.85[EUR][1000 genomes]
rs10993386	0.85[EUR][1000 genomes]
rs12553916	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1382411	0.91[AFR][1000 genomes]
rs1382412	0.91[AFR][1000 genomes]
rs1530331	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1542108	0.96[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs16911856	0.83[AFR][1000 genomes]
rs17355875	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs191654	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2099868	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2165715	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs242260	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2584805	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2675168	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs356125	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs356128	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs356132	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs356133	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs356136	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs356139	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs356145	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs356147	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs356148	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs356149	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs365465	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs367319	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3887267	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3910730	0.96[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs397783	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs397806	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs41316526	0.91[AFR][1000 genomes]
rs422502	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4332191	0.85[EUR][1000 genomes]
rs438742	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs448899	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs456276	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs457795	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4612413	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4743968	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4743970	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4743972	0.96[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs4743973	0.96[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs4744382	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4744387	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4744388	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4744402	0.88[AFR][1000 genomes]
rs555799	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56198429	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs562605	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56317174	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58281499	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60120	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60553517	0.87[AFR][1000 genomes]
rs61086657	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6479569	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6479575	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6479576	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6479577	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6479578	0.85[EUR][1000 genomes]
rs6479579	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6479581	0.85[EUR][1000 genomes]
rs6479582	0.96[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6479583	0.96[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs66495734	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66642068	0.91[AFR][1000 genomes]
rs66710673	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66863985	0.91[AFR][1000 genomes]
rs67208365	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68091393	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7019602	0.85[EUR][1000 genomes]
rs7022963	0.85[EUR][1000 genomes]
rs7025100	0.85[EUR][1000 genomes]
rs7025934	0.87[EUR][1000 genomes]
rs7026714	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7035166	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7038519	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7038891	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7044371	0.85[EUR][1000 genomes]
rs7047478	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72747019	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7341710	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73532355	0.87[AFR][1000 genomes]
rs73536067	0.87[AFR][1000 genomes]
rs73536074	0.87[AFR][1000 genomes]
rs73538177	0.91[AFR][1000 genomes]
rs7855781	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7867856	0.85[EUR][1000 genomes]
rs7870679	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs894426	0.85[EUR][1000 genomes]
rs894428	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9409589	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9409805	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1041922	chr9:97444976-97536753	Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97506200-97533400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr9:97509200-97536000	Weak transcription	Pancreas	Pancrea
3	chr9:97512600-97530400	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr9:97512600-97540800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr9:97512600-97544600	Weak transcription	Psoas Muscle	Psoas
6	chr9:97519800-97531200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr9:97519800-97544600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr9:97520400-97531800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr9:97520600-97530600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr9:97520800-97531200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr9:97521800-97541200	Weak transcription	Right Ventricle	heart
12	chr9:97522400-97540400	Weak transcription	Fetal Heart	heart
13	chr9:97522800-97532600	Weak transcription	K562	blood
14	chr9:97522800-97534600	Weak transcription	Fetal Brain Male	brain
15	chr9:97522800-97534600	Weak transcription	NHLF	lung
16	chr9:97523000-97534600	Weak transcription	Ovary	ovary
17	chr9:97523200-97532600	Weak transcription	Brain Hippocampus Middle	brain
18	chr9:97523200-97535000	Weak transcription	Colon Smooth Muscle	Colon
19	chr9:97523400-97530400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr9:97523400-97530800	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr9:97523400-97530800	Weak transcription	Brain Cingulate Gyrus	brain
22	chr9:97523400-97531200	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr9:97523400-97532000	Weak transcription	Adipose Nuclei	Adipose
24	chr9:97523400-97532000	Weak transcription	Duodenum Mucosa	Duodenum
25	chr9:97523400-97532000	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr9:97523400-97533000	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr9:97523400-97533400	Weak transcription	Brain Substantia Nigra	brain
28	chr9:97523400-97533600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr9:97523400-97534400	Weak transcription	Osteobl	bone
30	chr9:97523400-97534600	Weak transcription	Right Atrium	heart
31	chr9:97523400-97535600	Weak transcription	Aorta	Aorta
32	chr9:97523400-97535800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr9:97523400-97541400	Weak transcription	NHEK	skin
34	chr9:97523400-97544400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr9:97523400-97544400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr9:97523400-97545200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr9:97523400-97545200	Weak transcription	Liver	Liver
38	chr9:97523400-97545200	Weak transcription	Lung	lung
39	chr9:97523400-97545400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr9:97523400-97552600	Weak transcription	Dnd41	blood
41	chr9:97523400-97554000	Weak transcription	Primary T cells from cord blood	blood
42	chr9:97523400-97557800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr9:97523400-97563800	Weak transcription	Fetal Kidney	kidney
44	chr9:97523600-97530800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr9:97523600-97530800	Weak transcription	Fetal Lung	lung
46	chr9:97523600-97532200	Weak transcription	Fetal Intestine Small	intestine
47	chr9:97523600-97533600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr9:97523600-97534600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr9:97523600-97534600	Weak transcription	HSMM	muscle
50	chr9:97523600-97534600	Weak transcription	HSMMtube	muscle

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