Variant report

Variant	rs16911856
Chromosome Location	chr9:97700980-97700981
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97692662..97694714-chr9:97698664..97701164,2	K562	blood:
2	chr9:97692662..97695864-chr9:97697611..97701164,3	K562	blood:

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs1020962	1.00[JPT][hapmap]
rs1038092	1.00[JPT][hapmap]
rs10761371	1.00[JPT][hapmap]
rs10993471	1.00[JPT][hapmap]
rs12551506	0.80[AMR][1000 genomes]
rs12552838	1.00[CHB][hapmap];0.80[AMR][1000 genomes]
rs12553869	1.00[JPT][hapmap]
rs12553916	0.87[AFR][1000 genomes]
rs12554043	0.80[AMR][1000 genomes]
rs12554454	1.00[CHB][hapmap]
rs12555128	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12555829	1.00[JPT][hapmap]
rs12683896	0.80[AMR][1000 genomes]
rs1382411	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs1382412	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs1564235	1.00[JPT][hapmap]
rs1571896	1.00[JPT][hapmap]
rs16911834	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16911862	0.82[AMR][1000 genomes]
rs1871220	1.00[JPT][hapmap]
rs1888944	1.00[JPT][hapmap]
rs191654	0.87[AFR][1000 genomes]
rs2061798	1.00[JPT][hapmap]
rs2061801	1.00[JPT][hapmap]
rs2095069	0.80[AMR][1000 genomes]
rs2104888	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2306207	1.00[JPT][hapmap]
rs242260	0.83[AFR][1000 genomes]
rs2675168	0.87[AFR][1000 genomes]
rs35322834	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs356128	0.83[AFR][1000 genomes]
rs356136	0.83[AFR][1000 genomes]
rs356139	0.83[AFR][1000 genomes]
rs356148	0.83[AFR][1000 genomes]
rs356149	0.87[AFR][1000 genomes]
rs365465	0.87[AFR][1000 genomes]
rs3739748	1.00[JPT][hapmap]
rs3780560	1.00[JPT][hapmap]
rs3887267	0.87[AFR][1000 genomes]
rs397783	0.87[AFR][1000 genomes]
rs397806	0.87[AFR][1000 genomes]
rs41316526	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs422502	0.87[AFR][1000 genomes]
rs438742	0.83[AFR][1000 genomes]
rs448899	0.87[AFR][1000 genomes]
rs457795	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs4743975	1.00[JPT][hapmap]
rs4743977	1.00[JPT][hapmap]
rs4743989	1.00[JPT][hapmap]
rs4744402	0.81[AFR][1000 genomes]
rs4744421	1.00[JPT][hapmap]
rs4744437	1.00[JPT][hapmap]
rs4744440	1.00[JPT][hapmap]
rs58281499	0.87[AFR][1000 genomes]
rs60120	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs61086657	0.87[AFR][1000 genomes]
rs66642068	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs66710673	0.87[AFR][1000 genomes]
rs66863985	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs67208365	0.87[AFR][1000 genomes]
rs67490803	0.80[AMR][1000 genomes]
rs67756624	0.91[AMR][1000 genomes]
rs68090960	0.83[AFR][1000 genomes]
rs68091393	0.87[AFR][1000 genomes]
rs7022963	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7029570	0.80[AMR][1000 genomes]
rs7037239	1.00[YRI][hapmap]
rs7046900	1.00[JPT][hapmap];0.80[AMR][1000 genomes]
rs72748596	0.82[AMR][1000 genomes]
rs72748601	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72750335	0.82[AMR][1000 genomes]
rs7341710	0.83[AFR][1000 genomes]
rs73538177	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs9409589	0.83[AFR][1000 genomes]
rs9409805	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933919	chr9:97619512-97919344	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases
2	nsv1045849	chr9:97688810-97741336	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97660800-97702400	Weak transcription	Primary B cells from cord blood	blood
2	chr9:97670600-97766000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr9:97682000-97713800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr9:97684800-97711000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr9:97685200-97714600	Weak transcription	Primary hematopoietic stem cells	blood
6	chr9:97687000-97714000	Weak transcription	Thymus	Thymus
7	chr9:97689800-97702600	Weak transcription	Fetal Intestine Large	intestine
8	chr9:97691400-97703400	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr9:97691800-97710800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr9:97692200-97713000	Weak transcription	Primary T cells from cord blood	blood
11	chr9:97692400-97707600	Weak transcription	Fetal Muscle Trunk	muscle
12	chr9:97693200-97703000	Weak transcription	Pancreas	Pancrea
13	chr9:97693400-97712600	Weak transcription	Gastric	stomach
14	chr9:97695200-97701000	Genic enhancers	HSMMtube	muscle
15	chr9:97695600-97702400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr9:97695600-97703000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr9:97695600-97703000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr9:97695600-97709000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr9:97697400-97701000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr9:97697400-97701000	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr9:97697800-97701000	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr9:97697800-97703000	Weak transcription	Spleen	Spleen
23	chr9:97698400-97701000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr9:97698400-97701000	Enhancers	NHLF	lung
25	chr9:97698400-97702600	Weak transcription	Fetal Intestine Small	intestine
26	chr9:97698600-97701000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr9:97698600-97701000	Enhancers	Psoas Muscle	Psoas
28	chr9:97698600-97701000	Enhancers	NHDF-Ad	bronchial
29	chr9:97698800-97701000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr9:97698800-97701000	Enhancers	Hela-S3	cervix
31	chr9:97698800-97701200	Enhancers	K562	blood
32	chr9:97699000-97703000	Weak transcription	Adipose Nuclei	Adipose
33	chr9:97699200-97701000	Enhancers	Lung	lung
34	chr9:97699200-97703200	Weak transcription	Fetal Kidney	kidney
35	chr9:97699400-97701000	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr9:97699400-97701000	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr9:97699400-97701200	Enhancers	HUES6 Cell Line	embryonic stem cell
38	chr9:97699400-97701600	Weak transcription	Fetal Muscle Leg	muscle
39	chr9:97699600-97701000	Enhancers	H9 Cell Line	embryonic stem cell
40	chr9:97699600-97701000	Enhancers	iPS-15b Cell Line	embryonic stem cell
41	chr9:97699600-97703600	Weak transcription	Fetal Lung	lung
42	chr9:97699800-97701000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr9:97699800-97701200	Enhancers	iPS-20b Cell Line	embryonic stem cell
44	chr9:97699800-97702400	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr9:97699800-97702600	Weak transcription	Right Atrium	heart
46	chr9:97699800-97703000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr9:97699800-97703000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr9:97699800-97703000	Weak transcription	Colonic Mucosa	Colon
49	chr9:97699800-97703000	Weak transcription	Esophagus	oesophagus
50	chr9:97699800-97706400	Weak transcription	Brain Angular Gyrus	brain

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