Variant report

Variant	rs35322834
Chromosome Location	chr9:97676987-97676988
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:97674991..97691307-chr9:97751911..97773298,151	MCF-7	breast:
2	chr9:97676362..97677094-chr9:97755379..97755896,2	MCF-7	breast:
3	chr9:97572097..97590438-chr9:97672990..97690806,63	MCF-7	breast:
4	chr9:97671639..97694679-chr9:97760418..97786060,142	MCF-7	breast:
5	chr9:97675452..97677047-chr9:97832237..97834144,2	MCF-7	breast:
6	chr9:97674629..97677870-chr9:97679171..97683361,5	K562	blood:
7	chr9:97654596..97658293-chr9:97673712..97678137,5	MCF-7	breast:
8	chr9:97545277..97545817-chr9:97676617..97677280,2	MCF-7	breast:
9	chr9:97562492..97588737-chr9:97670126..97691056,102	MCF-7	breast:
10	chr9:97673705..97676027-chr9:97676375..97678857,2	K562	blood:
11	chr9:97646214..97649715-chr9:97676410..97681725,5	MCF-7	breast:
12	chr9:97665297..97668002-chr9:97676455..97679387,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000230815	Chromatin interaction
ENSG00000148120	Chromatin interaction
ENSG00000252153	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs12552838	1.00[EUR][1000 genomes]
rs12554454	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12555128	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1382411	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1382412	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16911834	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16911856	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16911862	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2104888	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs356133	1.00[AFR][1000 genomes]
rs356145	1.00[AFR][1000 genomes]
rs356147	1.00[AFR][1000 genomes]
rs41316526	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs456276	1.00[AFR][1000 genomes]
rs555799	1.00[AFR][1000 genomes]
rs56198429	1.00[AFR][1000 genomes]
rs56317174	1.00[AFR][1000 genomes]
rs6479578	0.81[AMR][1000 genomes]
rs66642068	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66863985	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67756624	0.90[AMR][1000 genomes]
rs7022963	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7046900	0.86[EUR][1000 genomes]
rs72747019	1.00[AFR][1000 genomes]
rs72748596	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72748601	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750335	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72750346	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73538177	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7867856	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933919	chr9:97619512-97919344	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97660800-97702400	Weak transcription	Primary B cells from cord blood	blood
2	chr9:97661600-97686200	Weak transcription	Primary T cells from cord blood	blood
3	chr9:97662400-97678600	Enhancers	Brain Substantia Nigra	brain
4	chr9:97662600-97680400	Enhancers	Brain Hippocampus Middle	brain
5	chr9:97666000-97678600	Enhancers	Brain Cingulate Gyrus	brain
6	chr9:97669000-97678200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr9:97669200-97678400	Enhancers	Fetal Heart	heart
8	chr9:97669800-97678200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr9:97670000-97678600	Weak transcription	Fetal Thymus	thymus
10	chr9:97670600-97766000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr9:97670800-97680600	Weak transcription	Ovary	ovary
12	chr9:97671000-97684200	Weak transcription	Small Intestine	intestine
13	chr9:97671600-97681600	Weak transcription	Fetal Muscle Leg	muscle
14	chr9:97671800-97678600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr9:97672400-97678000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr9:97672600-97678200	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr9:97672600-97680600	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr9:97672800-97677600	Weak transcription	Fetal Stomach	stomach
19	chr9:97672800-97678200	Enhancers	HepG2	liver
20	chr9:97673000-97677800	Weak transcription	Gastric	stomach
21	chr9:97673000-97678600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr9:97673000-97681600	Weak transcription	Spleen	Spleen
23	chr9:97673200-97678000	Enhancers	HSMMtube	muscle
24	chr9:97673600-97677800	Enhancers	HMEC	breast
25	chr9:97674000-97677200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr9:97674200-97677000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr9:97674200-97677400	Enhancers	Osteobl	bone
28	chr9:97674200-97681600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr9:97674200-97681600	Enhancers	Placenta	Placenta
30	chr9:97674400-97677200	Enhancers	NHDF-Ad	bronchial
31	chr9:97674400-97677400	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr9:97674400-97677400	Flanking Active TSS	A549	lung
33	chr9:97674400-97678200	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr9:97674400-97678600	Enhancers	HUES64 Cell Line	embryonic stem cell
35	chr9:97674400-97678600	Enhancers	Placenta Amnion	Placenta Amnion
36	chr9:97674600-97677000	Enhancers	NHEK	skin
37	chr9:97674600-97678200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr9:97674600-97678200	Enhancers	Left Ventricle	heart
39	chr9:97674600-97679600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr9:97674800-97677200	Enhancers	iPS-15b Cell Line	embryonic stem cell
41	chr9:97674800-97677200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr9:97674800-97677200	Enhancers	Skeletal Muscle Male	skeletal muscle
43	chr9:97674800-97677400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr9:97674800-97677400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr9:97674800-97677800	Enhancers	Brain Angular Gyrus	brain
46	chr9:97674800-97677800	Enhancers	HUVEC	blood vessel
47	chr9:97674800-97678000	Enhancers	NHLF	lung
48	chr9:97674800-97678200	Enhancers	iPS-18 Cell Line	embryonic stem cell
49	chr9:97674800-97678200	Enhancers	Stomach Mucosa	stomach
50	chr9:97675000-97677000	Enhancers	Rectal Mucosa Donor 31	rectum

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