Variant report

Variant	rs16911862
Chromosome Location	chr9:97708031-97708032
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:97707270..97710081-chr9:97771865..97774165,2	MCF-7	breast:
2	chr9:97706531..97708099-chr9:97709045..97711168,2	MCF-7	breast:
3	chr9:97705028..97708373-chr9:97712874..97716107,3	MCF-7	breast:
4	chr9:97701079..97703589-chr9:97706608..97709987,3	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10761363	0.84[ASN][1000 genomes]
rs12552838	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12554454	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12555128	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1382411	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1382412	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16911834	1.00[EUR][1000 genomes]
rs16911856	0.82[AMR][1000 genomes]
rs2104888	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35322834	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3910730	0.84[ASN][1000 genomes]
rs41316526	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4743972	0.84[ASN][1000 genomes]
rs4743973	0.84[ASN][1000 genomes]
rs6479578	0.81[AMR][1000 genomes]
rs6479582	0.84[ASN][1000 genomes]
rs6479583	0.84[ASN][1000 genomes]
rs66642068	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66863985	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67756624	0.90[AMR][1000 genomes]
rs7022963	0.88[AMR][1000 genomes]
rs7025100	0.84[ASN][1000 genomes]
rs7046900	0.86[EUR][1000 genomes]
rs72748596	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72748601	1.00[EUR][1000 genomes]
rs72750335	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72750346	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73538177	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7867856	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933919	chr9:97619512-97919344	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases
2	nsv1045849	chr9:97688810-97741336	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3450410	chr9:97707761-97708103	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97670600-97766000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr9:97682000-97713800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr9:97684800-97711000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr9:97685200-97714600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr9:97687000-97714000	Weak transcription	Thymus	Thymus
6	chr9:97691800-97710800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr9:97692200-97713000	Weak transcription	Primary T cells from cord blood	blood
8	chr9:97693400-97712600	Weak transcription	Gastric	stomach
9	chr9:97695600-97709000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr9:97700200-97708200	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr9:97700200-97714600	Weak transcription	Fetal Stomach	stomach
12	chr9:97700200-97718600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr9:97703600-97710600	Weak transcription	Placenta	Placenta
14	chr9:97703800-97712400	Weak transcription	Spleen	Spleen
15	chr9:97703800-97713000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr9:97704000-97709000	Weak transcription	Right Ventricle	heart
17	chr9:97704000-97710000	Weak transcription	Left Ventricle	heart
18	chr9:97704000-97710800	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr9:97704000-97711200	Weak transcription	Adipose Nuclei	Adipose
20	chr9:97704000-97712400	Weak transcription	Pancreas	Pancrea
21	chr9:97704000-97712600	Weak transcription	Lung	lung
22	chr9:97704000-97713000	Weak transcription	Duodenum Mucosa	Duodenum
23	chr9:97704400-97712800	Weak transcription	Fetal Lung	lung
24	chr9:97704800-97712800	Weak transcription	HUVEC	blood vessel
25	chr9:97705000-97712400	Weak transcription	Liver	Liver
26	chr9:97706200-97708400	Enhancers	Sigmoid Colon	Sigmoid Colon
27	chr9:97706200-97709000	Enhancers	Osteobl	bone
28	chr9:97706200-97709200	Enhancers	NHLF	lung
29	chr9:97706400-97708800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr9:97706400-97708800	Enhancers	HSMMtube	muscle
31	chr9:97706400-97709000	Enhancers	Hela-S3	cervix
32	chr9:97706400-97709200	Enhancers	Pancreatic Islets	Pancreatic Islet
33	chr9:97706600-97708400	Enhancers	Rectal Mucosa Donor 29	rectum
34	chr9:97706600-97709200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr9:97706600-97709200	Enhancers	HMEC	breast
36	chr9:97706800-97708800	Enhancers	Fetal Intestine Large	intestine
37	chr9:97706800-97709000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr9:97706800-97709000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr9:97707000-97708800	Enhancers	Rectal Mucosa Donor 31	rectum
40	chr9:97707000-97713400	Weak transcription	Small Intestine	intestine
41	chr9:97707200-97708800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr9:97707200-97709000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr9:97707200-97709200	Enhancers	NHEK	skin
44	chr9:97707200-97709800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
45	chr9:97707400-97708800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr9:97707400-97708800	Enhancers	Brain Substantia Nigra	brain
47	chr9:97707400-97709000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr9:97707400-97709000	Enhancers	Brain Cingulate Gyrus	brain
49	chr9:97707400-97709000	Enhancers	Colon Smooth Muscle	Colon
50	chr9:97707400-97709200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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