Variant report

Variant	rs3910730
Chromosome Location	chr9:97667910-97667911
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:97665297..97668002-chr9:97676455..97679387,2	MCF-7	breast:
2	chr9:97664999..97668189-chr9:97674058..97675675,3	MCF-7	breast:
3	chr9:97666485..97669668-chr9:97669881..97673620,4	MCF-7	breast:
4	chr9:97577751..97580681-chr9:97667871..97670064,2	MCF-7	breast:
5	chr9:97667630..97670627-chr9:97680732..97685586,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000148120	Chromatin interaction

Extended variants
information (count: 100 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs10125566	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10217441	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10732407	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10739988	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10739990	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10739991	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10761362	0.81[AMR][1000 genomes]
rs10761363	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821411	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10993386	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1113967	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12553916	0.92[AFR][1000 genomes]
rs12554454	0.84[ASN][1000 genomes]
rs1382411	0.87[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs1382412	0.87[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs1542107	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1542108	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16911862	0.84[ASN][1000 genomes]
rs191654	0.92[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2099868	0.82[EUR][1000 genomes]
rs2119953	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2165715	0.82[EUR][1000 genomes]
rs2406897	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2406898	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs242260	0.96[AFR][1000 genomes]
rs2584805	0.82[EUR][1000 genomes]
rs2675168	0.92[AFR][1000 genomes]
rs2897523	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs356125	0.82[EUR][1000 genomes]
rs356128	0.96[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs356132	0.82[EUR][1000 genomes]
rs356133	0.82[EUR][1000 genomes]
rs356136	0.96[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs356139	0.96[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs356145	0.82[EUR][1000 genomes]
rs356147	0.82[EUR][1000 genomes]
rs356148	0.96[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs356149	0.92[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs365465	0.92[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs367319	0.82[EUR][1000 genomes]
rs3847311	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3886568	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3887267	0.92[AFR][1000 genomes]
rs397783	0.92[AFR][1000 genomes]
rs397806	0.92[AFR][1000 genomes]
rs41316526	0.87[AFR][1000 genomes]
rs422502	0.92[AFR][1000 genomes]
rs4332191	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs438742	0.96[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs448899	0.92[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs456276	0.82[EUR][1000 genomes]
rs457795	0.96[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs4743968	0.88[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs4743972	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4743973	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4744382	0.82[EUR][1000 genomes]
rs4744388	0.82[EUR][1000 genomes]
rs4744389	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4744402	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs562605	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs58281499	0.92[AFR][1000 genomes]
rs60120	0.92[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs60553517	0.83[AFR][1000 genomes]
rs61086657	0.92[AFR][1000 genomes]
rs6479569	0.82[EUR][1000 genomes]
rs6479575	0.82[EUR][1000 genomes]
rs6479578	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6479579	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6479581	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6479582	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6479583	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66495734	0.80[AFR][1000 genomes]
rs66642068	0.87[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs66710673	0.92[AFR][1000 genomes]
rs66863985	0.87[AFR][1000 genomes]
rs67208365	0.92[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs68090960	0.96[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs68091393	0.92[AFR][1000 genomes]
rs7019602	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7022963	0.96[EUR][1000 genomes]
rs7025100	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7038891	0.88[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7044371	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7047478	0.82[EUR][1000 genomes]
rs72748596	0.84[ASN][1000 genomes]
rs7341710	0.96[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs73532355	0.83[AFR][1000 genomes]
rs73536067	0.83[AFR][1000 genomes]
rs73536074	0.83[AFR][1000 genomes]
rs73538177	0.87[AFR][1000 genomes]
rs7852844	0.86[AMR][1000 genomes]
rs7855781	0.88[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7864389	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7867856	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7869736	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs894426	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs894427	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9409589	0.96[AFR][1000 genomes]
rs9409805	0.92[AFR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933919	chr9:97619512-97919344	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97633400-97671800	Weak transcription	Esophagus	oesophagus
2	chr9:97655800-97668400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr9:97656400-97669000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:97658800-97668400	Weak transcription	Pancreas	Pancrea
5	chr9:97660800-97702400	Weak transcription	Primary B cells from cord blood	blood
6	chr9:97661600-97686200	Weak transcription	Primary T cells from cord blood	blood
7	chr9:97662400-97678600	Enhancers	Brain Substantia Nigra	brain
8	chr9:97662600-97669600	Weak transcription	Right Atrium	heart
9	chr9:97662600-97670000	Weak transcription	Fetal Intestine Small	intestine
10	chr9:97662600-97680400	Enhancers	Brain Hippocampus Middle	brain
11	chr9:97662800-97669200	Weak transcription	Lung	lung
12	chr9:97662800-97670000	Weak transcription	Fetal Intestine Large	intestine
13	chr9:97663400-97669000	Weak transcription	Fetal Muscle Leg	muscle
14	chr9:97663400-97669200	Weak transcription	Fetal Heart	heart
15	chr9:97663400-97671200	Enhancers	HepG2	liver
16	chr9:97663600-97668000	Enhancers	NHLF	lung
17	chr9:97663600-97669000	Weak transcription	Stomach Smooth Muscle	stomach
18	chr9:97663600-97669600	Weak transcription	Fetal Stomach	stomach
19	chr9:97663800-97669600	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr9:97664400-97669600	Weak transcription	Colon Smooth Muscle	Colon
21	chr9:97664600-97668200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr9:97664600-97669000	Weak transcription	Stomach Mucosa	stomach
23	chr9:97664800-97668200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr9:97664800-97669000	Weak transcription	Fetal Kidney	kidney
25	chr9:97664800-97669200	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr9:97664800-97669600	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr9:97664800-97669600	Weak transcription	Psoas Muscle	Psoas
28	chr9:97664800-97670000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr9:97664800-97670000	Weak transcription	Rectal Smooth Muscle	rectum
30	chr9:97664800-97671800	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr9:97664800-97672000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr9:97664800-97672200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr9:97664800-97673400	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr9:97664800-97673400	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr9:97664800-97674200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr9:97665000-97669000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr9:97665000-97669000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr9:97665000-97669000	Weak transcription	Fetal Lung	lung
39	chr9:97665000-97669200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr9:97665200-97674200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr9:97665400-97674200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr9:97665800-97669200	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr9:97666000-97672000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr9:97666000-97678600	Enhancers	Brain Cingulate Gyrus	brain
45	chr9:97666200-97668400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr9:97666200-97668400	Weak transcription	Ovary	ovary
47	chr9:97666400-97668000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr9:97666400-97668000	Flanking Active TSS	A549	lung
49	chr9:97666600-97668800	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr9:97666600-97669000	Weak transcription	Placenta	Placenta

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