Variant report

Variant	rs7864389
Chromosome Location	chr9:97631253-97631254
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:97628489..97631594-chr9:97765586..97768215,3	MCF-7	breast:
2	chr9:97627475..97632236-chr9:97687625..97689828,4	MCF-7	breast:
3	chr9:97630487..97632741-chr9:97640057..97642082,2	MCF-7	breast:
4	chr9:97630097..97631954-chr9:97679073..97680785,2	MCF-7	breast:
5	chr9:97613776..97615491-chr9:97629001..97631689,2	MCF-7	breast:
6	chr9:97621507..97626749-chr9:97626893..97633201,8	MCF-7	breast:
7	chr9:97629113..97631715-chr9:97662982..97664521,2	MCF-7	breast:
8	chr9:97586655..97589155-chr9:97630334..97631988,2	MCF-7	breast:
9	chr9:97629078..97631329-chr9:97854502..97856532,2	MCF-7	breast:
10	chr9:97631226..97633221-chr9:97637766..97639575,2	MCF-7	breast:
11	chr9:97626766..97634519-chr9:97675095..97684236,17	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000148120	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10125566	0.89[AMR][1000 genomes]
rs10217441	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10732407	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10739988	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10739990	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10739991	0.81[AMR][1000 genomes]
rs10761362	0.86[AMR][1000 genomes]
rs10761363	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10821407	0.83[AMR][1000 genomes]
rs10821411	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10993386	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1113967	0.89[AMR][1000 genomes]
rs1530331	0.83[AMR][1000 genomes]
rs1542107	0.89[AMR][1000 genomes]
rs1542108	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2119953	0.89[AMR][1000 genomes]
rs2165715	0.89[AMR][1000 genomes]
rs2406897	0.89[AMR][1000 genomes]
rs2406898	0.89[AMR][1000 genomes]
rs2897523	0.89[AMR][1000 genomes]
rs3847311	0.86[AMR][1000 genomes]
rs3886568	0.89[AMR][1000 genomes]
rs3910730	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4332191	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4743970	0.81[AMR][1000 genomes]
rs4743972	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4743973	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4744379	0.80[AFR][1000 genomes]
rs4744387	0.83[AMR][1000 genomes]
rs4744388	0.89[AMR][1000 genomes]
rs4744389	0.89[AMR][1000 genomes]
rs4744402	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6479576	0.83[AMR][1000 genomes]
rs6479577	0.85[AMR][1000 genomes]
rs6479578	0.93[EUR][1000 genomes]
rs6479579	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6479581	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6479582	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6479583	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7019602	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7022963	0.93[EUR][1000 genomes]
rs7025100	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7025934	0.81[AMR][1000 genomes]
rs7026714	0.83[AMR][1000 genomes]
rs7031172	0.80[AFR][1000 genomes]
rs7035166	0.83[AMR][1000 genomes]
rs7038519	0.83[AMR][1000 genomes]
rs7044371	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7852844	0.81[AMR][1000 genomes]
rs7867856	0.93[EUR][1000 genomes]
rs7869736	0.89[AMR][1000 genomes]
rs7870679	0.83[AMR][1000 genomes]
rs894426	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs894427	0.89[AMR][1000 genomes]
rs894428	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933919	chr9:97619512-97919344	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97624200-97632800	Weak transcription	Thymus	Thymus
2	chr9:97624800-97632800	Weak transcription	Duodenum Mucosa	Duodenum
3	chr9:97625000-97632000	Weak transcription	Primary T cells from cord blood	blood
4	chr9:97625000-97637800	Weak transcription	Primary B cells from cord blood	blood
5	chr9:97625200-97631800	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr9:97625400-97631800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr9:97625400-97632200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr9:97625600-97632800	Weak transcription	Dnd41	blood
9	chr9:97626000-97638200	Enhancers	HSMM	muscle
10	chr9:97626000-97638400	Enhancers	HSMMtube	muscle
11	chr9:97626200-97632400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr9:97626400-97632800	Weak transcription	Right Ventricle	heart
13	chr9:97626600-97631600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr9:97626600-97631600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr9:97626600-97631800	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr9:97626800-97632000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr9:97627200-97638000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr9:97627400-97637800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr9:97627800-97631800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr9:97628600-97633200	Enhancers	Placenta Amnion	Placenta Amnion
21	chr9:97628600-97641000	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr9:97629000-97632400	Enhancers	Stomach Mucosa	stomach
23	chr9:97629200-97634600	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr9:97629200-97635800	Enhancers	HMEC	breast
25	chr9:97629200-97636000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr9:97629600-97632000	Enhancers	Ovary	ovary
27	chr9:97629600-97632200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr9:97629600-97632800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr9:97629600-97635200	Enhancers	Placenta	Placenta
30	chr9:97629800-97631800	Enhancers	Brain Cingulate Gyrus	brain
31	chr9:97629800-97632000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr9:97629800-97633200	Weak transcription	Fetal Muscle Trunk	muscle
33	chr9:97630000-97632000	Enhancers	Fetal Lung	lung
34	chr9:97630000-97632000	Enhancers	HepG2	liver
35	chr9:97630000-97632200	Enhancers	Sigmoid Colon	Sigmoid Colon
36	chr9:97630000-97632400	Enhancers	NHLF	lung
37	chr9:97630000-97638400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr9:97630000-97645000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr9:97630200-97631600	Weak transcription	K562	blood
40	chr9:97630200-97631800	Enhancers	Left Ventricle	heart
41	chr9:97630200-97632200	Enhancers	HUVEC	blood vessel
42	chr9:97630200-97632800	Enhancers	NHEK	skin
43	chr9:97630200-97633600	Enhancers	NH-A	brain
44	chr9:97630200-97634000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr9:97630200-97634400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr9:97630200-97636800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr9:97630200-97637600	Enhancers	Osteobl	bone
48	chr9:97630200-97638000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr9:97630200-97638200	Enhancers	Muscle Satellite Cultured Cells	--
50	chr9:97630200-97638200	Enhancers	NHDF-Ad	bronchial

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