Variant report

Variant	rs7022963
Chromosome Location	chr9:97674360-97674361
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:97673705..97676027-chr9:97676375..97678857,2	K562	blood:
2	chr9:97605514..97607331-chr9:97673824..97676310,2	MCF-7	breast:
3	chr9:97668089..97669647-chr9:97673227..97674945,2	MCF-7	breast:
4	chr9:97572097..97590438-chr9:97672990..97690806,63	MCF-7	breast:
5	chr9:97671639..97694679-chr9:97760418..97786060,142	MCF-7	breast:
6	chr9:97654596..97658293-chr9:97673712..97678137,5	MCF-7	breast:
7	chr9:97670509..97672235-chr9:97673084..97674732,2	MCF-7	breast:
8	chr9:97672296..97674089-chr9:97674357..97675914,2	MCF-7	breast:
9	chr9:97562492..97588737-chr9:97670126..97691056,102	MCF-7	breast:
10	chr9:97664999..97668189-chr9:97674058..97675675,3	MCF-7	breast:
11	chr14:91792413..91794057-chr9:97673728..97676663,2	MCF-7	breast:
12	chr9:97591718..97593908-chr9:97672689..97674656,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000252153	Chromatin interaction
ENSG00000230815	Chromatin interaction
ENSG00000148120	Chromatin interaction

Extended variants
information (count: 123 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:122)

rs_ID	r²[population]
rs10125566	0.85[EUR][1000 genomes]
rs1020962	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs10217441	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1038092	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[JPT][hapmap]
rs10732407	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs10733756	0.82[EUR][1000 genomes]
rs10739988	1.00[EUR][1000 genomes]
rs10739990	1.00[EUR][1000 genomes]
rs10739991	0.85[EUR][1000 genomes]
rs10761362	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs10761363	1.00[EUR][1000 genomes]
rs10761371	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs10821411	1.00[EUR][1000 genomes]
rs10993386	1.00[EUR][1000 genomes]
rs10993471	1.00[ASW][hapmap];1.00[JPT][hapmap]
rs1113967	0.85[EUR][1000 genomes]
rs12553869	1.00[JPT][hapmap]
rs12554043	0.88[MEX][hapmap];1.00[TSI][hapmap]
rs12554454	0.84[AMR][1000 genomes]
rs12555128	1.00[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12555829	1.00[JPT][hapmap]
rs1530331	0.88[MEX][hapmap];0.85[TSI][hapmap]
rs1542107	0.88[MEX][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs1542108	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1564235	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs1571896	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs16911834	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs16911856	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs16911862	0.88[AMR][1000 genomes]
rs1871220	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs1888944	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs191654	0.85[EUR][1000 genomes]
rs2026399	0.88[MEX][hapmap];1.00[TSI][hapmap]
rs2061798	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs2061799	1.00[CEU][hapmap]
rs2061801	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs2095069	0.88[MEX][hapmap];1.00[TSI][hapmap]
rs2099868	0.85[EUR][1000 genomes]
rs2104888	1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2119953	0.85[EUR][1000 genomes]
rs2165715	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];0.85[TSI][hapmap];0.85[EUR][1000 genomes]
rs2306207	1.00[JPT][hapmap]
rs2406897	0.85[EUR][1000 genomes]
rs2406898	1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs2584805	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.85[EUR][1000 genomes]
rs2897523	0.85[EUR][1000 genomes]
rs35322834	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs356125	1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs356128	1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs356132	0.85[EUR][1000 genomes]
rs356133	1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs356136	0.85[EUR][1000 genomes]
rs356139	0.85[EUR][1000 genomes]
rs356145	0.85[EUR][1000 genomes]
rs356147	1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs356148	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.85[EUR][1000 genomes]
rs356149	0.85[EUR][1000 genomes]
rs365465	0.85[EUR][1000 genomes]
rs367319	0.85[EUR][1000 genomes]
rs3739748	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs3780560	1.00[JPT][hapmap]
rs3847311	0.85[EUR][1000 genomes]
rs3886568	0.88[MEX][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs3887267	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap]
rs3910730	0.96[EUR][1000 genomes]
rs41316526	0.83[ASN][1000 genomes]
rs4332191	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs438742	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.85[EUR][1000 genomes]
rs448899	0.85[EUR][1000 genomes]
rs456276	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[TSI][hapmap];0.85[EUR][1000 genomes]
rs457795	1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs4743968	0.85[EUR][1000 genomes]
rs4743972	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4743973	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4743975	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs4743977	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs4743989	1.00[JPT][hapmap]
rs4744382	0.85[EUR][1000 genomes]
rs4744388	0.85[EUR][1000 genomes]
rs4744389	0.85[EUR][1000 genomes]
rs4744402	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4744421	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs4744437	1.00[JPT][hapmap]
rs4744440	1.00[JPT][hapmap]
rs555799	0.82[EUR][1000 genomes]
rs562605	1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs60120	1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs6479569	1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs6479574	1.00[CHB][hapmap]
rs6479575	0.85[EUR][1000 genomes]
rs6479578	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6479579	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6479581	1.00[EUR][1000 genomes]
rs6479582	1.00[EUR][1000 genomes]
rs6479583	1.00[EUR][1000 genomes]
rs66863985	0.83[ASN][1000 genomes]
rs67208365	0.85[EUR][1000 genomes]
rs68090960	0.85[EUR][1000 genomes]
rs7019602	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7023719	1.00[CEU][hapmap]
rs7025100	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs7029570	0.88[MEX][hapmap];0.85[TSI][hapmap]
rs7035166	0.88[MEX][hapmap];0.85[TSI][hapmap]
rs7038891	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.85[EUR][1000 genomes]
rs7044371	1.00[EUR][1000 genomes]
rs7046900	1.00[JPT][hapmap]
rs7047478	0.85[EUR][1000 genomes]
rs72748596	0.88[AMR][1000 genomes]
rs72748601	0.83[ASN][1000 genomes]
rs72750335	0.88[AMR][1000 genomes]
rs72750346	0.81[AMR][1000 genomes]
rs7341710	0.85[EUR][1000 genomes]
rs7852844	0.82[EUR][1000 genomes]
rs7855781	1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs7864389	0.93[EUR][1000 genomes]
rs7867856	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7869736	1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs894425	1.00[CHB][hapmap]
rs894426	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs894427	0.85[EUR][1000 genomes]
rs899268	1.00[YRI][hapmap]
rs9409805	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933919	chr9:97619512-97919344	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97660800-97702400	Weak transcription	Primary B cells from cord blood	blood
2	chr9:97661600-97686200	Weak transcription	Primary T cells from cord blood	blood
3	chr9:97662400-97678600	Enhancers	Brain Substantia Nigra	brain
4	chr9:97662600-97680400	Enhancers	Brain Hippocampus Middle	brain
5	chr9:97666000-97678600	Enhancers	Brain Cingulate Gyrus	brain
6	chr9:97666600-97674400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr9:97667400-97674600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr9:97667800-97675200	Enhancers	Brain Anterior Caudate	brain
9	chr9:97669000-97675200	Enhancers	Fetal Lung	lung
10	chr9:97669000-97678200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr9:97669200-97678400	Enhancers	Fetal Heart	heart
12	chr9:97669800-97678200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr9:97670000-97678600	Weak transcription	Fetal Thymus	thymus
14	chr9:97670200-97674800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr9:97670400-97674800	Weak transcription	HUVEC	blood vessel
16	chr9:97670600-97674600	Weak transcription	Left Ventricle	heart
17	chr9:97670600-97676400	Weak transcription	Right Ventricle	heart
18	chr9:97670600-97766000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr9:97670800-97674400	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr9:97670800-97674600	Weak transcription	Psoas Muscle	Psoas
21	chr9:97670800-97675000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr9:97670800-97675800	Weak transcription	Fetal Intestine Large	intestine
23	chr9:97670800-97676000	Weak transcription	Stomach Smooth Muscle	stomach
24	chr9:97670800-97676600	Weak transcription	Right Atrium	heart
25	chr9:97670800-97680600	Weak transcription	Ovary	ovary
26	chr9:97671000-97674400	Weak transcription	NHDF-Ad	bronchial
27	chr9:97671000-97674600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr9:97671000-97676400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr9:97671000-97684200	Weak transcription	Small Intestine	intestine
30	chr9:97671400-97674800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr9:97671400-97675600	Weak transcription	Rectal Smooth Muscle	rectum
32	chr9:97671600-97675400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr9:97671600-97675600	Weak transcription	Fetal Intestine Small	intestine
34	chr9:97671600-97681600	Weak transcription	Fetal Muscle Leg	muscle
35	chr9:97671800-97675000	Enhancers	Hela-S3	cervix
36	chr9:97671800-97678600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr9:97672200-97674400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr9:97672200-97674400	Weak transcription	NH-A	brain
39	chr9:97672200-97674800	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr9:97672400-97674600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr9:97672400-97675000	Weak transcription	Aorta	Aorta
42	chr9:97672400-97675600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
43	chr9:97672400-97678000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr9:97672600-97678200	Enhancers	HUES6 Cell Line	embryonic stem cell
45	chr9:97672600-97680600	Enhancers	Brain Inferior Temporal Lobe	brain
46	chr9:97672800-97674400	Weak transcription	Pancreas	Pancrea
47	chr9:97672800-97674800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr9:97672800-97676800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr9:97672800-97677600	Weak transcription	Fetal Stomach	stomach
50	chr9:97672800-97678200	Enhancers	HepG2	liver

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