Variant report

Variant	rs4744382
Chromosome Location	chr9:97604047-97604048
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97603596..97605725-chr9:97686092..97688717,2	MCF-7	breast:

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs10217441	0.85[EUR][1000 genomes]
rs10732407	0.85[EUR][1000 genomes]
rs10733756	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10739988	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10739990	0.85[EUR][1000 genomes]
rs10761360	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10761363	0.85[EUR][1000 genomes]
rs10821407	0.82[EUR][1000 genomes]
rs10821411	0.85[EUR][1000 genomes]
rs10993386	0.85[EUR][1000 genomes]
rs12553916	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1530331	0.87[EUR][1000 genomes]
rs1542108	0.85[EUR][1000 genomes]
rs17355875	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs191654	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2099868	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2165715	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs242260	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2584805	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2675168	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs356125	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs356128	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs356132	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs356133	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs356136	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs356139	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs356145	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs356147	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs356148	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs356149	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs365465	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs367319	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3887267	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3910730	0.82[EUR][1000 genomes]
rs397783	0.89[AMR][1000 genomes]
rs397806	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs422502	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4332191	0.85[EUR][1000 genomes]
rs438742	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs448899	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs456276	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs457795	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4612413	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4743968	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4743970	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4743972	0.82[EUR][1000 genomes]
rs4743973	0.82[EUR][1000 genomes]
rs4744387	0.87[EUR][1000 genomes]
rs4744388	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs555799	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56198429	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs562605	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56317174	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58281499	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs60120	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61086657	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6479569	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6479575	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6479576	0.87[EUR][1000 genomes]
rs6479577	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6479578	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6479579	0.85[EUR][1000 genomes]
rs6479581	0.85[EUR][1000 genomes]
rs6479582	0.85[EUR][1000 genomes]
rs6479583	0.85[EUR][1000 genomes]
rs66495734	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs66710673	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs67208365	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs68090960	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs68091393	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7019602	0.85[EUR][1000 genomes]
rs7022963	0.85[EUR][1000 genomes]
rs7025100	0.85[EUR][1000 genomes]
rs7025934	0.87[EUR][1000 genomes]
rs7026714	0.82[EUR][1000 genomes]
rs7035166	0.87[EUR][1000 genomes]
rs7038519	0.87[EUR][1000 genomes]
rs7038891	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7044371	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7047478	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72747019	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7341710	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7855781	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7867856	0.85[EUR][1000 genomes]
rs7870679	0.87[EUR][1000 genomes]
rs894426	0.85[EUR][1000 genomes]
rs894428	0.87[EUR][1000 genomes]
rs9409589	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9409805	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97571800-97622600	Weak transcription	Primary B cells from cord blood	blood
2	chr9:97581800-97609600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr9:97585000-97609600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr9:97589200-97605400	Weak transcription	Spleen	Spleen
5	chr9:97589200-97609400	Weak transcription	Pancreas	Pancrea
6	chr9:97589200-97622400	Weak transcription	Aorta	Aorta
7	chr9:97590600-97609600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr9:97590600-97616000	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr9:97591000-97609200	Weak transcription	Osteobl	bone
10	chr9:97592200-97608400	Weak transcription	HSMMtube	muscle
11	chr9:97592200-97609400	Weak transcription	NHDF-Ad	bronchial
12	chr9:97598400-97604600	Weak transcription	HepG2	liver
13	chr9:97600000-97609400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr9:97600200-97609600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr9:97600800-97609000	Weak transcription	HSMM	muscle
16	chr9:97601000-97604600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr9:97601600-97605400	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr9:97602400-97604600	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr9:97602400-97605200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr9:97602400-97605400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr9:97602400-97616000	Weak transcription	Fetal Intestine Small	intestine
22	chr9:97602400-97620200	Weak transcription	GM12878-XiMat	blood
23	chr9:97602400-97622200	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr9:97602800-97609600	Weak transcription	Primary hematopoietic stem cells	blood
25	chr9:97603000-97612600	Weak transcription	Primary T cells from cord blood	blood
26	chr9:97603000-97614600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr9:97603200-97624600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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