Variant report

Variant	rs2095069
Chromosome Location	chr9:97702500-97702501
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:97701029..97702557-chr9:97765376..97768237,2	MCF-7	breast:
2	chr9:97702356..97704660-chr9:97713620..97715867,3	MCF-7	breast:
3	chr9:97701079..97703589-chr9:97706608..97709987,3	K562	blood:
4	chr9:97702032..97704710-chr9:97710037..97711547,2	K562	blood:

Variant related genes	Relation type
ENSG00000148120	Chromatin interaction

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs1004813	0.82[JPT][hapmap]
rs10125566	0.84[AMR][1000 genomes]
rs10217441	1.00[TSI][hapmap];0.84[AMR][1000 genomes]
rs10512252	0.82[JPT][hapmap]
rs10732407	0.84[AMR][1000 genomes]
rs10739988	0.84[AMR][1000 genomes]
rs10739990	0.84[AMR][1000 genomes]
rs10739991	0.82[JPT][hapmap]
rs10761362	0.88[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes]
rs10821411	0.84[AMR][1000 genomes]
rs10993435	1.00[CEU][hapmap]
rs10993449	1.00[CEU][hapmap]
rs1113967	0.82[JPT][hapmap];0.84[AMR][1000 genomes]
rs12551506	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12552838	1.00[AMR][1000 genomes]
rs12554043	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12555128	0.88[MEX][hapmap];1.00[TSI][hapmap]
rs12682668	0.82[JPT][hapmap]
rs12683896	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12684139	0.82[JPT][hapmap]
rs12684154	0.82[JPT][hapmap]
rs12684461	0.82[JPT][hapmap]
rs12684470	0.82[JPT][hapmap]
rs12686277	0.82[JPT][hapmap]
rs12686500	0.82[JPT][hapmap]
rs1382411	0.88[AMR][1000 genomes]
rs1382412	0.88[AMR][1000 genomes]
rs1530331	0.88[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap]
rs1542107	0.88[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes]
rs1571897	0.87[GIH][hapmap];1.00[JPT][hapmap]
rs16905557	0.82[JPT][hapmap]
rs16911801	0.82[JPT][hapmap]
rs16911802	0.82[JPT][hapmap]
rs16911817	0.82[JPT][hapmap]
rs16911821	0.82[JPT][hapmap]
rs16911826	0.82[JPT][hapmap]
rs16911834	1.00[AMR][1000 genomes]
rs16911856	0.80[AMR][1000 genomes]
rs1806996	0.82[JPT][hapmap]
rs1904201	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2026399	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2061799	0.81[GIH][hapmap]
rs2078379	0.82[JPT][hapmap]
rs2119953	0.82[JPT][hapmap];0.84[AMR][1000 genomes]
rs2165715	1.00[MEX][hapmap];0.85[TSI][hapmap]
rs2406897	0.84[AMR][1000 genomes]
rs2406898	0.88[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes]
rs2584805	0.88[MEX][hapmap];0.85[TSI][hapmap]
rs2896816	1.00[CEU][hapmap]
rs2897523	0.82[JPT][hapmap];0.84[AMR][1000 genomes]
rs356148	0.88[MEX][hapmap];0.85[TSI][hapmap]
rs3824493	0.82[JPT][hapmap]
rs3847309	0.82[JPT][hapmap]
rs3847310	0.82[JPT][hapmap]
rs3847311	0.81[AMR][1000 genomes]
rs3886567	0.82[JPT][hapmap]
rs3886568	0.85[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes]
rs41316526	0.88[AMR][1000 genomes]
rs4332191	0.84[AMR][1000 genomes]
rs438742	0.88[MEX][hapmap];0.85[TSI][hapmap]
rs456276	0.85[TSI][hapmap]
rs4743976	0.81[GIH][hapmap];1.00[JPT][hapmap]
rs4744389	0.82[JPT][hapmap];0.84[AMR][1000 genomes]
rs6479568	0.82[JPT][hapmap]
rs6479576	0.82[JPT][hapmap]
rs6479578	0.88[MEX][hapmap];1.00[TSI][hapmap]
rs6479581	0.84[AMR][1000 genomes]
rs66642068	0.88[AMR][1000 genomes]
rs66863985	0.88[AMR][1000 genomes]
rs66993340	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs67490803	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67756624	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7019602	1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes]
rs7022739	0.81[GIH][hapmap]
rs7022963	0.88[MEX][hapmap];1.00[TSI][hapmap]
rs7026714	0.82[JPT][hapmap]
rs7029570	0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.85[TSI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7035166	0.88[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap]
rs7038519	0.82[JPT][hapmap]
rs7038891	0.88[MEX][hapmap];0.85[TSI][hapmap]
rs7042271	1.00[CEU][hapmap]
rs7044371	0.84[AMR][1000 genomes]
rs7045005	0.82[JPT][hapmap]
rs7046900	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72748601	1.00[AMR][1000 genomes]
rs73538177	0.88[AMR][1000 genomes]
rs7465900	0.82[JPT][hapmap]
rs7850601	0.82[JPT][hapmap]
rs7850680	0.82[JPT][hapmap]
rs7867856	0.88[MEX][hapmap];1.00[TSI][hapmap]
rs7869736	0.88[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes]
rs7870679	0.82[JPT][hapmap]
rs894426	0.84[AMR][1000 genomes]
rs894427	0.82[JPT][hapmap];0.84[AMR][1000 genomes]
rs894428	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933919	chr9:97619512-97919344	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases
2	nsv1045849	chr9:97688810-97741336	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97670600-97766000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr9:97682000-97713800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr9:97684800-97711000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr9:97685200-97714600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr9:97687000-97714000	Weak transcription	Thymus	Thymus
6	chr9:97689800-97702600	Weak transcription	Fetal Intestine Large	intestine
7	chr9:97691400-97703400	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr9:97691800-97710800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr9:97692200-97713000	Weak transcription	Primary T cells from cord blood	blood
10	chr9:97692400-97707600	Weak transcription	Fetal Muscle Trunk	muscle
11	chr9:97693200-97703000	Weak transcription	Pancreas	Pancrea
12	chr9:97693400-97712600	Weak transcription	Gastric	stomach
13	chr9:97695600-97703000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr9:97695600-97703000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr9:97695600-97709000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr9:97697800-97703000	Weak transcription	Spleen	Spleen
17	chr9:97698400-97702600	Weak transcription	Fetal Intestine Small	intestine
18	chr9:97699000-97703000	Weak transcription	Adipose Nuclei	Adipose
19	chr9:97699200-97703200	Weak transcription	Fetal Kidney	kidney
20	chr9:97699600-97703600	Weak transcription	Fetal Lung	lung
21	chr9:97699800-97702600	Weak transcription	Right Atrium	heart
22	chr9:97699800-97703000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr9:97699800-97703000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr9:97699800-97703000	Weak transcription	Colonic Mucosa	Colon
25	chr9:97699800-97703000	Weak transcription	Esophagus	oesophagus
26	chr9:97699800-97706400	Weak transcription	Brain Angular Gyrus	brain
27	chr9:97700000-97702800	Weak transcription	Small Intestine	intestine
28	chr9:97700000-97703000	Weak transcription	Duodenum Mucosa	Duodenum
29	chr9:97700000-97703000	Weak transcription	Ovary	ovary
30	chr9:97700000-97703000	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr9:97700000-97703000	Weak transcription	Right Ventricle	heart
32	chr9:97700000-97703000	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr9:97700000-97703000	Strong transcription	HSMM	muscle
34	chr9:97700000-97703400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr9:97700200-97703000	Weak transcription	Brain Anterior Caudate	brain
36	chr9:97700200-97703400	Weak transcription	Brain Cingulate Gyrus	brain
37	chr9:97700200-97703600	Weak transcription	HMEC	breast
38	chr9:97700200-97707200	Weak transcription	Brain Hippocampus Middle	brain
39	chr9:97700200-97707400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr9:97700200-97707400	Weak transcription	Brain Substantia Nigra	brain
41	chr9:97700200-97707600	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr9:97700200-97707600	Weak transcription	Stomach Smooth Muscle	stomach
43	chr9:97700200-97707800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr9:97700200-97708200	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr9:97700200-97714600	Weak transcription	Fetal Stomach	stomach
46	chr9:97700200-97718600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr9:97700400-97707200	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr9:97700600-97702600	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr9:97700600-97703000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr9:97700600-97703000	Weak transcription	Left Ventricle	heart

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