Variant report

Variant	rs7022739
Chromosome Location	chr9:97788207-97788208
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:97682865..97685291-chr9:97786421..97788402,2	MCF-7	breast:
2	chr9:97785869..97788341-chr9:97791572..97794035,3	MCF-7	breast:
3	chr9:97786821..97789606-chr9:97794967..97796572,3	K562	blood:

Variant related genes	Relation type
ENSG00000148120	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1020962	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1038092	1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10739991	1.00[CEU][hapmap]
rs10761371	0.83[AMR][1000 genomes]
rs10993471	1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes]
rs1113967	1.00[CEU][hapmap]
rs12554043	0.81[GIH][hapmap]
rs12555829	1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs12683030	0.86[JPT][hapmap]
rs1530331	0.81[GIH][hapmap]
rs1542107	1.00[CEU][hapmap];0.81[GIH][hapmap]
rs1564235	0.81[AMR][1000 genomes]
rs1571896	1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs1571897	1.00[ASW][hapmap];1.00[CEU][hapmap];0.82[CHD][hapmap];0.93[GIH][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1871220	0.81[AMR][1000 genomes]
rs1888944	0.86[MEX][hapmap];1.00[TSI][hapmap]
rs2026399	0.81[GIH][hapmap]
rs2061798	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2061799	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2061801	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2095069	0.81[GIH][hapmap]
rs2119953	1.00[CEU][hapmap]
rs2306207	1.00[MEX][hapmap];1.00[TSI][hapmap]
rs2406898	1.00[CEU][hapmap];0.81[GIH][hapmap]
rs2897523	1.00[CEU][hapmap]
rs3739748	1.00[MEX][hapmap];0.90[AMR][1000 genomes]
rs3802449	0.86[JPT][hapmap]
rs3886568	1.00[CEU][hapmap];0.81[GIH][hapmap]
rs400727	0.83[CHD][hapmap];0.86[JPT][hapmap]
rs4647549	0.86[JPT][hapmap]
rs4743975	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs4743976	1.00[CEU][hapmap];0.87[GIH][hapmap];0.86[MEX][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4743977	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4743978	0.81[AMR][1000 genomes]
rs4744389	1.00[CEU][hapmap]
rs4744421	1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs4744437	0.81[AMR][1000 genomes]
rs6479589	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6479596	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6479597	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs67134693	0.90[AMR][1000 genomes]
rs7023719	0.86[MEX][hapmap]
rs7029570	0.81[GIH][hapmap]
rs7035166	0.81[GIH][hapmap]
rs73540087	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7869736	1.00[CEU][hapmap];0.81[GIH][hapmap]
rs894427	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933919	chr9:97619512-97919344	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97769600-97790200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr9:97770800-97810000	Weak transcription	Primary T cells from cord blood	blood
3	chr9:97773200-97793200	Weak transcription	Brain Germinal Matrix	brain
4	chr9:97777400-97794200	Weak transcription	Thymus	Thymus
5	chr9:97779400-97789200	Genic enhancers	Liver	Liver
6	chr9:97780600-97790800	Weak transcription	Fetal Brain Female	brain
7	chr9:97781200-97793600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr9:97781400-97793200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr9:97781400-97793600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr9:97782000-97792800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr9:97782600-97793600	Weak transcription	Primary hematopoietic stem cells	blood
12	chr9:97783200-97789400	Enhancers	Brain Substantia Nigra	brain
13	chr9:97783400-97789000	Transcr. at gene 5' and 3'	A549	lung
14	chr9:97783600-97794000	Weak transcription	GM12878-XiMat	blood
15	chr9:97783800-97789000	Genic enhancers	HSMMtube	muscle
16	chr9:97783800-97789600	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr9:97784200-97789200	Enhancers	Brain Hippocampus Middle	brain
18	chr9:97784400-97788800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr9:97784400-97789000	Genic enhancers	NHEK	skin
20	chr9:97784600-97789000	Enhancers	Brain Cingulate Gyrus	brain
21	chr9:97785000-97788400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr9:97785000-97789000	Enhancers	Brain Inferior Temporal Lobe	brain
23	chr9:97785000-97789200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
24	chr9:97785000-97789200	Enhancers	Fetal Kidney	kidney
25	chr9:97785200-97788800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr9:97785200-97788800	Enhancers	Adipose Nuclei	Adipose
27	chr9:97785200-97789000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr9:97785200-97789000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr9:97785200-97789000	Enhancers	Brain Anterior Caudate	brain
30	chr9:97785200-97789000	Genic enhancers	Fetal Intestine Small	intestine
31	chr9:97785400-97788400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr9:97785400-97788600	Enhancers	Brain Angular Gyrus	brain
33	chr9:97785400-97788600	Enhancers	Fetal Lung	lung
34	chr9:97785400-97789000	Genic enhancers	Fetal Intestine Large	intestine
35	chr9:97785600-97788400	Genic enhancers	Placenta	Placenta
36	chr9:97785800-97788800	Flanking Active TSS	Stomach Smooth Muscle	stomach
37	chr9:97785800-97789000	Enhancers	Stomach Mucosa	stomach
38	chr9:97786000-97788800	Enhancers	Placenta Amnion	Placenta Amnion
39	chr9:97786200-97790600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr9:97786200-97791800	Enhancers	Right Ventricle	heart
41	chr9:97786400-97790200	Enhancers	Pancreatic Islets	Pancreatic Islet
42	chr9:97786600-97788800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr9:97786800-97788600	Enhancers	Fetal Heart	heart
44	chr9:97787000-97788600	Weak transcription	Small Intestine	intestine
45	chr9:97787000-97788800	Enhancers	Duodenum Smooth Muscle	Duodenum
46	chr9:97787000-97789000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr9:97787000-97789200	Genic enhancers	HSMM	muscle
48	chr9:97787000-97790200	Weak transcription	HMEC	breast
49	chr9:97787000-97794000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr9:97787200-97788400	Enhancers	Breast Myoepithelial Primary Cells	Breast

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