Variant report

Variant	rs67490803
Chromosome Location	chr9:97693557-97693558
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:97692108..97695032-chr9:97695709..97697990,2	K562	blood:
2	chr9:97671639..97694679-chr9:97760418..97786060,142	MCF-7	breast:
3	chr9:97692349..97695282-chr9:97736142..97738350,2	MCF-7	breast:
4	chr9:97692878..97695081-chr9:97763307..97765405,2	MCF-7	breast:
5	chr9:97692662..97695864-chr9:97697611..97701164,3	K562	blood:
6	chr9:97692662..97694714-chr9:97698664..97701164,2	K562	blood:

Variant related genes	Relation type
ENSG00000224764	Chromatin interaction
ENSG00000148120	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10125566	0.84[AMR][1000 genomes]
rs10217441	0.84[AMR][1000 genomes]
rs10732407	0.84[AMR][1000 genomes]
rs10739988	0.84[AMR][1000 genomes]
rs10739990	0.84[AMR][1000 genomes]
rs10761362	0.81[AMR][1000 genomes]
rs10821411	0.84[AMR][1000 genomes]
rs1113967	0.84[AMR][1000 genomes]
rs12551506	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12552838	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12554043	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12683896	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1382411	0.88[AMR][1000 genomes]
rs1382412	0.88[AMR][1000 genomes]
rs1542107	0.84[AMR][1000 genomes]
rs16911834	1.00[AMR][1000 genomes]
rs16911856	0.80[AMR][1000 genomes]
rs1904201	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2026399	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2095069	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2119953	0.84[AMR][1000 genomes]
rs2406897	0.84[AMR][1000 genomes]
rs2406898	0.84[AMR][1000 genomes]
rs2897523	0.84[AMR][1000 genomes]
rs3847311	0.81[AMR][1000 genomes]
rs3886568	0.84[AMR][1000 genomes]
rs41316526	0.88[AMR][1000 genomes]
rs4332191	0.84[AMR][1000 genomes]
rs4744389	0.84[AMR][1000 genomes]
rs6479581	0.84[AMR][1000 genomes]
rs66642068	0.88[AMR][1000 genomes]
rs66863985	0.88[AMR][1000 genomes]
rs66993340	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs67756624	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7019602	0.84[AMR][1000 genomes]
rs7029570	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7044371	0.84[AMR][1000 genomes]
rs7046900	1.00[AMR][1000 genomes]
rs72748601	1.00[AMR][1000 genomes]
rs73538177	0.88[AMR][1000 genomes]
rs7869736	0.84[AMR][1000 genomes]
rs894426	0.84[AMR][1000 genomes]
rs894427	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933919	chr9:97619512-97919344	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases
2	nsv1045849	chr9:97688810-97741336	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97660800-97702400	Weak transcription	Primary B cells from cord blood	blood
2	chr9:97670600-97766000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr9:97680400-97698000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr9:97680600-97700000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr9:97682000-97713800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr9:97684200-97699600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr9:97684800-97711000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr9:97685200-97714600	Weak transcription	Primary hematopoietic stem cells	blood
9	chr9:97685600-97699600	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr9:97685800-97693600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr9:97686000-97698800	Weak transcription	Rectal Smooth Muscle	rectum
12	chr9:97686200-97694200	Genic enhancers	A549	lung
13	chr9:97686400-97695200	Weak transcription	Ovary	ovary
14	chr9:97687000-97693800	Enhancers	HepG2	liver
15	chr9:97687000-97699400	Weak transcription	Fetal Heart	heart
16	chr9:97687000-97714000	Weak transcription	Thymus	Thymus
17	chr9:97687200-97694400	Strong transcription	HSMM	muscle
18	chr9:97688800-97694600	Enhancers	Hela-S3	cervix
19	chr9:97689000-97695200	Weak transcription	Aorta	Aorta
20	chr9:97689000-97699400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr9:97689200-97699600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr9:97689600-97693600	Enhancers	Left Ventricle	heart
23	chr9:97689800-97695200	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr9:97689800-97697200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr9:97689800-97702600	Weak transcription	Fetal Intestine Large	intestine
26	chr9:97690000-97693800	Weak transcription	K562	blood
27	chr9:97690600-97699600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr9:97690800-97695000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr9:97691000-97695400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr9:97691400-97698400	Weak transcription	Stomach Smooth Muscle	stomach
31	chr9:97691400-97703400	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr9:97691600-97694600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr9:97691600-97695200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr9:97691600-97695200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr9:97691600-97698400	Weak transcription	NHLF	lung
36	chr9:97691600-97699400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr9:97691800-97696800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr9:97691800-97698200	Weak transcription	Fetal Lung	lung
39	chr9:97691800-97710800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr9:97692000-97699000	Weak transcription	Brain Anterior Caudate	brain
41	chr9:97692200-97695200	Weak transcription	Osteobl	bone
42	chr9:97692200-97713000	Weak transcription	Primary T cells from cord blood	blood
43	chr9:97692400-97694000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr9:97692400-97695400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr9:97692400-97696600	Weak transcription	Fetal Stomach	stomach
46	chr9:97692400-97697000	Weak transcription	Spleen	Spleen
47	chr9:97692400-97698400	Weak transcription	Brain Hippocampus Middle	brain
48	chr9:97692400-97698800	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr9:97692400-97699200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr9:97692400-97699400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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