Variant report

Variant	rs7042271
Chromosome Location	chr9:97754447-97754448
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:25)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:25 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:97724594..97727372-chr9:97752153..97754740,2	K562	blood:
2	chr9:97627040..97629485-chr9:97753881..97755520,2	MCF-7	breast:
3	chr9:97544941..97546058-chr9:97754006..97754844,6	MCF-7	breast:
4	chr9:97712915..97713959-chr9:97753956..97754999,6	MCF-7	breast:
5	chr9:97551865..97553652-chr9:97754340..97757104,2	MCF-7	breast:
6	chr9:97443407..97445106-chr9:97754287..97756345,2	MCF-7	breast:
7	chr9:97674046..97692471-chr9:97747275..97760115,80	MCF-7	breast:
8	chr9:97752670..97754568-chr9:97772070..97774701,2	K562	blood:
9	chr9:97754348..97755145-chr9:97891474..97892141,2	MCF-7	breast:
10	chr9:97712985..97713881-chr9:97754020..97754788,2	MCF-7	breast:
11	chr9:97754348..97755849-chr9:97891444..97892141,4	MCF-7	breast:
12	chr9:97544221..97547787-chr9:97752281..97754950,4	MCF-7	breast:
13	chr9:97714988..97715787-chr9:97754061..97754824,3	MCF-7	breast:
14	chr9:97744231..97746948-chr9:97752217..97755192,2	MCF-7	breast:
15	chr9:97401014..97401905-chr9:97753880..97755554,4	MCF-7	breast:
16	chr9:97401014..97401905-chr9:97754352..97755554,3	MCF-7	breast:
17	chr9:97543420..97548041-chr9:97751061..97760906,16	MCF-7	breast:
18	chr9:97544780..97546117-chr9:97753944..97754906,16	MCF-7	breast:
19	chr9:97606436..97609041-chr9:97752277..97755166,2	MCF-7	breast:
20	chr9:97674991..97691307-chr9:97751911..97773298,151	MCF-7	breast:
21	chr9:97753870..97756647-chr9:97766977..97768882,2	K562	blood:
22	chr9:97753450..97755640-chr9:97808889..97813272,3	MCF-7	breast:
23	chr9:97544877..97546218-chr9:97753797..97756011,68	MCF-7	breast:
24	chr9:97544881..97546082-chr9:97753830..97756011,45	MCF-7	breast:
25	chr9:97712961..97713959-chr9:97754003..97754999,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000148120	Chromatin interaction
ENSG00000165140	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10761364	0.81[CHB][hapmap]
rs10993427	0.81[CHB][hapmap];0.88[YRI][hapmap]
rs10993435	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10993439	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993449	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12551506	1.00[CEU][hapmap]
rs12554043	1.00[CEU][hapmap]
rs1564234	0.81[CHB][hapmap]
rs16911886	0.90[JPT][hapmap]
rs1888944	0.88[MEX][hapmap]
rs1904201	1.00[CEU][hapmap]
rs2026399	1.00[CEU][hapmap]
rs2061799	0.88[MEX][hapmap]
rs2095069	1.00[CEU][hapmap]
rs2404295	0.84[ASW][hapmap];0.82[LWK][hapmap];0.81[MKK][hapmap];0.88[YRI][hapmap];0.81[AFR][1000 genomes]
rs2404296	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2404302	0.81[CHB][hapmap]
rs2896816	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3802454	0.81[CHB][hapmap]
rs3802456	0.81[CHB][hapmap]
rs4744423	0.81[CHB][hapmap]
rs7023719	0.93[CHB][hapmap];0.88[MEX][hapmap]
rs7029570	1.00[CEU][hapmap]
rs7848018	0.90[JPT][hapmap];0.82[MKK][hapmap]
rs7851173	0.81[CHB][hapmap]
rs7866661	0.90[JPT][hapmap];0.81[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933919	chr9:97619512-97919344	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97670600-97766000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr9:97713800-97757400	Weak transcription	Fetal Brain Female	brain
3	chr9:97715000-97758200	Weak transcription	Spleen	Spleen
4	chr9:97733400-97757600	Weak transcription	Esophagus	oesophagus
5	chr9:97734600-97757600	Weak transcription	Gastric	stomach
6	chr9:97736600-97757200	Weak transcription	NH-A	brain
7	chr9:97736600-97757400	Weak transcription	NHLF	lung
8	chr9:97736600-97757600	Weak transcription	Adipose Nuclei	Adipose
9	chr9:97736600-97757600	Weak transcription	Osteobl	bone
10	chr9:97736600-97766200	Weak transcription	Right Ventricle	heart
11	chr9:97737000-97757200	Weak transcription	Fetal Heart	heart
12	chr9:97737000-97758200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr9:97738000-97757600	Weak transcription	Lung	lung
14	chr9:97738200-97757600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr9:97738600-97757200	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr9:97738600-97757400	Weak transcription	Left Ventricle	heart
17	chr9:97738600-97757600	Weak transcription	Stomach Smooth Muscle	stomach
18	chr9:97738800-97754800	Weak transcription	NHDF-Ad	bronchial
19	chr9:97740200-97758200	Weak transcription	Placenta	Placenta
20	chr9:97741200-97758200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr9:97742600-97757400	Weak transcription	Psoas Muscle	Psoas
22	chr9:97742600-97763200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr9:97743000-97757000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr9:97743200-97757200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr9:97743200-97759200	Weak transcription	Primary B cells from peripheral blood	blood
26	chr9:97743400-97757600	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr9:97743600-97758200	Weak transcription	Fetal Muscle Trunk	muscle
28	chr9:97744000-97757600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr9:97744000-97758200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr9:97744200-97757600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr9:97744200-97763200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr9:97744400-97757400	Weak transcription	Brain Angular Gyrus	brain
33	chr9:97744400-97757400	Weak transcription	Brain Hippocampus Middle	brain
34	chr9:97744400-97757600	Weak transcription	Brain Cingulate Gyrus	brain
35	chr9:97744800-97758200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr9:97745000-97757600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr9:97746000-97762000	Weak transcription	Duodenum Mucosa	Duodenum
38	chr9:97746200-97757200	Weak transcription	HSMMtube	muscle
39	chr9:97746200-97757400	Weak transcription	Fetal Muscle Leg	muscle
40	chr9:97746200-97758200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr9:97746200-97758200	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr9:97747400-97759200	Weak transcription	Primary T cells from cord blood	blood
43	chr9:97747800-97757400	Weak transcription	Brain Anterior Caudate	brain
44	chr9:97747800-97757400	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr9:97748600-97758800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr9:97748600-97761800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr9:97748800-97758200	Weak transcription	Pancreatic Islets	Pancreatic Islet
48	chr9:97750000-97762200	Weak transcription	Thymus	Thymus
49	chr9:97750800-97754600	Weak transcription	Ovary	ovary
50	chr9:97751000-97755200	Weak transcription	Primary B cells from cord blood	blood

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