Variant report

Variant	rs7848018
Chromosome Location	chr9:97748906-97748907
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:97674046..97692471-chr9:97747275..97760115,80	MCF-7	breast:
2	chr9:97544533..97546348-chr9:97748753..97750698,2	K562	blood:
3	chr9:97685386..97687734-chr9:97748226..97751187,2	MCF-7	breast:
4	chr9:97684145..97686309-chr9:97748541..97750239,2	K562	blood:
5	chr9:97746218..97749108-chr9:97765101..97767458,4	K562	blood:

Variant related genes	Relation type
ENSG00000148120	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1004427	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1004813	1.00[CEU][hapmap]
rs10512250	0.90[CHB][hapmap];1.00[TSI][hapmap]
rs10512252	1.00[CEU][hapmap]
rs10993409	0.90[CHB][hapmap]
rs10993410	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10993420	0.90[CHB][hapmap]
rs10993422	0.90[CHB][hapmap];1.00[TSI][hapmap]
rs10993423	0.90[CHB][hapmap];1.00[TSI][hapmap]
rs10993425	0.90[CHB][hapmap]
rs10993428	0.82[CHB][hapmap]
rs10993429	0.90[CHB][hapmap];1.00[TSI][hapmap]
rs10993435	0.90[JPT][hapmap]
rs10993441	0.90[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs10993443	0.90[CHB][hapmap]
rs10993445	0.90[CHB][hapmap]
rs10993446	0.90[CHB][hapmap];1.00[TSI][hapmap]
rs10993448	0.85[CHB][hapmap]
rs10993449	0.90[JPT][hapmap]
rs10993451	0.88[CHB][hapmap]
rs12236420	0.90[CHB][hapmap]
rs12236825	0.90[CHB][hapmap]
rs12238576	0.90[CHB][hapmap]
rs12682668	1.00[CEU][hapmap]
rs12684139	1.00[CEU][hapmap]
rs12684461	1.00[CEU][hapmap]
rs12684470	1.00[CEU][hapmap]
rs12686277	1.00[CEU][hapmap]
rs12686500	1.00[CEU][hapmap]
rs16905557	1.00[CEU][hapmap]
rs16911801	1.00[CEU][hapmap]
rs16911802	1.00[CEU][hapmap]
rs16911817	1.00[CEU][hapmap]
rs16911821	1.00[CEU][hapmap]
rs16911826	1.00[CEU][hapmap]
rs16911884	0.90[CHB][hapmap]
rs16911886	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16911887	0.90[CHB][hapmap];1.00[TSI][hapmap]
rs2078379	1.00[CEU][hapmap]
rs28495509	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2896816	0.90[JPT][hapmap]
rs3802457	0.90[CHB][hapmap];1.00[TSI][hapmap]
rs3802458	0.90[CHB][hapmap];1.00[TSI][hapmap]
rs3847309	1.00[CEU][hapmap]
rs3847310	1.00[CEU][hapmap]
rs3886567	1.00[CEU][hapmap]
rs55814604	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7042271	0.90[JPT][hapmap];0.82[MKK][hapmap]
rs72750344	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750350	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750352	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750370	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7465900	1.00[CEU][hapmap]
rs7866661	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7867908	0.90[CHB][hapmap]
rs7875888	0.90[CHB][hapmap];1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933919	chr9:97619512-97919344	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97670600-97766000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr9:97713800-97757400	Weak transcription	Fetal Brain Female	brain
3	chr9:97715000-97758200	Weak transcription	Spleen	Spleen
4	chr9:97715400-97749600	Weak transcription	Thymus	Thymus
5	chr9:97728000-97754200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr9:97733400-97757600	Weak transcription	Esophagus	oesophagus
7	chr9:97734600-97757600	Weak transcription	Gastric	stomach
8	chr9:97736600-97757200	Weak transcription	NH-A	brain
9	chr9:97736600-97757400	Weak transcription	NHLF	lung
10	chr9:97736600-97757600	Weak transcription	Adipose Nuclei	Adipose
11	chr9:97736600-97757600	Weak transcription	Osteobl	bone
12	chr9:97736600-97766200	Weak transcription	Right Ventricle	heart
13	chr9:97737000-97757200	Weak transcription	Fetal Heart	heart
14	chr9:97737000-97758200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr9:97738000-97757600	Weak transcription	Lung	lung
16	chr9:97738200-97757600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr9:97738600-97749200	Weak transcription	Ovary	ovary
18	chr9:97738600-97753600	Weak transcription	Fetal Lung	lung
19	chr9:97738600-97757200	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr9:97738600-97757400	Weak transcription	Left Ventricle	heart
21	chr9:97738600-97757600	Weak transcription	Stomach Smooth Muscle	stomach
22	chr9:97738800-97754800	Weak transcription	NHDF-Ad	bronchial
23	chr9:97740200-97758200	Weak transcription	Placenta	Placenta
24	chr9:97741200-97758200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr9:97742400-97753000	Weak transcription	Fetal Intestine Large	intestine
26	chr9:97742600-97757400	Weak transcription	Psoas Muscle	Psoas
27	chr9:97742600-97763200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr9:97742800-97754400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr9:97743000-97752600	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr9:97743000-97757000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr9:97743200-97752000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr9:97743200-97757200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr9:97743200-97759200	Weak transcription	Primary B cells from peripheral blood	blood
34	chr9:97743400-97751200	Weak transcription	Fetal Stomach	stomach
35	chr9:97743400-97757600	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr9:97743600-97758200	Weak transcription	Fetal Muscle Trunk	muscle
37	chr9:97743800-97749800	Weak transcription	Aorta	Aorta
38	chr9:97744000-97750600	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr9:97744000-97751200	Weak transcription	Fetal Intestine Small	intestine
40	chr9:97744000-97757600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr9:97744000-97758200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr9:97744200-97757600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr9:97744200-97763200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr9:97744400-97754200	Weak transcription	Fetal Kidney	kidney
45	chr9:97744400-97757400	Weak transcription	Brain Angular Gyrus	brain
46	chr9:97744400-97757400	Weak transcription	Brain Hippocampus Middle	brain
47	chr9:97744400-97757600	Weak transcription	Brain Cingulate Gyrus	brain
48	chr9:97744800-97752000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr9:97744800-97754400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr9:97744800-97758200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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