Variant report

Variant	rs72750352
Chromosome Location	chr9:97742967-97742968
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:97740546..97743135-chr9:97764674..97767622,2	K562	blood:
2	chr9:97741635..97744525-chr9:97765545..97768244,3	K562	blood:
3	chr9:97740253..97742678-chr9:97742723..97744837,2	MCF-7	breast:
4	chr9:97685017..97689714-chr9:97737820..97743340,6	MCF-7	breast:
5	chr9:97741056..97743749-chr9:97766661..97768613,2	MCF-7	breast:
6	chr9:97734614..97737497-chr9:97742689..97744554,2	MCF-7	breast:
7	chr9:97688920..97691846-chr9:97741162..97743776,2	K562	blood:
8	chr9:97742880..97744753-chr9:97762967..97764495,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000148120	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1004427	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993410	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10993441	0.90[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs16911886	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28495509	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55814604	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750344	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750350	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750370	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7848018	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7866661	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933919	chr9:97619512-97919344	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97670600-97766000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr9:97713800-97757400	Weak transcription	Fetal Brain Female	brain
3	chr9:97715000-97758200	Weak transcription	Spleen	Spleen
4	chr9:97715200-97748200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr9:97715400-97749600	Weak transcription	Thymus	Thymus
6	chr9:97718800-97744000	Weak transcription	GM12878-XiMat	blood
7	chr9:97719000-97743400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr9:97719000-97745800	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr9:97719400-97746200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr9:97719400-97747000	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr9:97719600-97747000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr9:97724800-97743000	Weak transcription	Brain Angular Gyrus	brain
13	chr9:97724800-97743000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr9:97728000-97754200	Weak transcription	Primary hematopoietic stem cells	blood
15	chr9:97731600-97743000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr9:97733400-97757600	Weak transcription	Esophagus	oesophagus
17	chr9:97734600-97757600	Weak transcription	Gastric	stomach
18	chr9:97734800-97743000	Weak transcription	Brain Substantia Nigra	brain
19	chr9:97734800-97747200	Weak transcription	Right Atrium	heart
20	chr9:97735600-97743000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr9:97736200-97743000	Weak transcription	Brain Anterior Caudate	brain
22	chr9:97736200-97748000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr9:97736600-97747000	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr9:97736600-97757200	Weak transcription	NH-A	brain
25	chr9:97736600-97757400	Weak transcription	NHLF	lung
26	chr9:97736600-97757600	Weak transcription	Adipose Nuclei	Adipose
27	chr9:97736600-97757600	Weak transcription	Osteobl	bone
28	chr9:97736600-97766200	Weak transcription	Right Ventricle	heart
29	chr9:97737000-97757200	Weak transcription	Fetal Heart	heart
30	chr9:97737000-97758200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr9:97738000-97747200	Weak transcription	Pancreas	Pancrea
32	chr9:97738000-97757600	Weak transcription	Lung	lung
33	chr9:97738200-97757600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr9:97738600-97745200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr9:97738600-97745600	Weak transcription	Duodenum Mucosa	Duodenum
36	chr9:97738600-97749200	Weak transcription	Ovary	ovary
37	chr9:97738600-97753600	Weak transcription	Fetal Lung	lung
38	chr9:97738600-97757200	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr9:97738600-97757400	Weak transcription	Left Ventricle	heart
40	chr9:97738600-97757600	Weak transcription	Stomach Smooth Muscle	stomach
41	chr9:97738800-97754800	Weak transcription	NHDF-Ad	bronchial
42	chr9:97739600-97744400	Enhancers	Breast Myoepithelial Primary Cells	Breast
43	chr9:97740000-97745800	Weak transcription	A549	lung
44	chr9:97740200-97758200	Weak transcription	Placenta	Placenta
45	chr9:97741200-97743200	Strong transcription	Primary B cells from peripheral blood	blood
46	chr9:97741200-97758200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr9:97741400-97743000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr9:97741400-97743200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr9:97741400-97743200	Strong transcription	Fetal Stomach	stomach
50	chr9:97741400-97743600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links