Variant report

Variant	rs899268
Chromosome Location	chr9:97799129-97799130
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:97798563..97802420-chr9:97810899..97813846,4	MCF-7	breast:
2	chr9:97793038..97795418-chr9:97797884..97800566,2	K562	blood:
3	chr9:97796997..97799888-chr9:97851480..97854262,2	MCF-7	breast:
4	chr9:97796632..97799193-chr9:97809608..97812323,2	MCF-7	breast:
5	chr9:97544575..97547315-chr9:97798052..97799769,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000148120	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7022963	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933919	chr9:97619512-97919344	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases
2	nsv1038106	chr9:97793038-97881416	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
3	nsv1038523	chr9:97797032-97923774	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
4	nsv540175	chr9:97797032-97923774	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97770800-97810000	Weak transcription	Primary T cells from cord blood	blood
2	chr9:97789000-97806200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr9:97791600-97799600	Weak transcription	Hela-S3	cervix
4	chr9:97791600-97800000	Weak transcription	Placenta	Placenta
5	chr9:97793000-97800000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr9:97793200-97802200	Weak transcription	Fetal Kidney	kidney
7	chr9:97793400-97810400	Weak transcription	HUVEC	blood vessel
8	chr9:97793800-97800000	Weak transcription	Adipose Nuclei	Adipose
9	chr9:97794000-97799800	Weak transcription	Fetal Lung	lung
10	chr9:97794200-97805800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr9:97794200-97807000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr9:97794400-97806000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr9:97794600-97800000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr9:97794600-97800000	Weak transcription	Colonic Mucosa	Colon
15	chr9:97794600-97805000	Weak transcription	Fetal Thymus	thymus
16	chr9:97794800-97799800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr9:97795000-97799200	Weak transcription	HMEC	breast
18	chr9:97795000-97802200	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr9:97795000-97810400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr9:97795200-97804000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr9:97795400-97800000	Weak transcription	Fetal Muscle Trunk	muscle
22	chr9:97795400-97800000	Weak transcription	Gastric	stomach
23	chr9:97795400-97803000	Enhancers	Colon Smooth Muscle	Colon
24	chr9:97795400-97806200	Genic enhancers	A549	lung
25	chr9:97795600-97799200	Weak transcription	NH-A	brain
26	chr9:97795600-97799800	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr9:97795600-97802200	Weak transcription	Spleen	Spleen
28	chr9:97795600-97806000	Weak transcription	Lung	lung
29	chr9:97795600-97808600	Weak transcription	Primary hematopoietic stem cells	blood
30	chr9:97795800-97799200	Weak transcription	Brain Cingulate Gyrus	brain
31	chr9:97795800-97800000	Weak transcription	Right Atrium	heart
32	chr9:97795800-97802200	Weak transcription	Small Intestine	intestine
33	chr9:97796000-97800800	Strong transcription	HepG2	liver
34	chr9:97796600-97802200	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr9:97797000-97799200	Strong transcription	Fetal Intestine Small	intestine
36	chr9:97797000-97800000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr9:97797000-97800400	Enhancers	Psoas Muscle	Psoas
38	chr9:97797000-97807800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr9:97797200-97800000	Weak transcription	Right Ventricle	heart
40	chr9:97797600-97799800	Strong transcription	Duodenum Mucosa	Duodenum
41	chr9:97797800-97800400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr9:97797800-97800800	Enhancers	Skeletal Muscle Female	skeletal muscle
43	chr9:97798000-97800000	Enhancers	Duodenum Smooth Muscle	Duodenum
44	chr9:97798200-97799400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
45	chr9:97798200-97799400	Enhancers	NHDF-Ad	bronchial
46	chr9:97798200-97799800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr9:97798200-97800000	Strong transcription	Fetal Intestine Large	intestine
48	chr9:97798200-97800200	Genic enhancers	Osteobl	bone
49	chr9:97798200-97800400	Genic enhancers	Fetal Stomach	stomach
50	chr9:97798200-97801200	Genic enhancers	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links