Variant report

Variant	rs7031637
Chromosome Location	chr9:97651395-97651396
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97649888..97652305-chr9:97683979..97686393,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10125566	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs10217441	0.88[AMR][1000 genomes]
rs10732407	0.88[AMR][1000 genomes]
rs10739988	0.88[AMR][1000 genomes]
rs10739990	0.88[AMR][1000 genomes]
rs10739991	0.80[AMR][1000 genomes]
rs10761362	0.85[AMR][1000 genomes]
rs10821411	0.88[AMR][1000 genomes]
rs10993386	0.83[AMR][1000 genomes]
rs1113967	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs1542107	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs2119953	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs2406897	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs2406898	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs2897523	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs3847311	0.85[AMR][1000 genomes]
rs3886568	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs4332191	0.88[AMR][1000 genomes]
rs4744389	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs6479581	0.88[AMR][1000 genomes]
rs7019602	0.88[AMR][1000 genomes]
rs7025100	0.83[AMR][1000 genomes]
rs7030703	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7044371	0.88[AMR][1000 genomes]
rs7852844	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs7869736	0.88[AMR][1000 genomes]
rs894426	0.88[AMR][1000 genomes]
rs894427	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933919	chr9:97619512-97919344	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97633400-97671800	Weak transcription	Esophagus	oesophagus
2	chr9:97638600-97661800	Weak transcription	Fetal Intestine Small	intestine
3	chr9:97644400-97652000	Weak transcription	Right Atrium	heart
4	chr9:97645600-97653200	Weak transcription	Fetal Brain Male	brain
5	chr9:97648000-97652800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr9:97648000-97652800	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr9:97648000-97657400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr9:97648400-97653000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr9:97648400-97656400	Weak transcription	NH-A	brain
10	chr9:97648400-97657400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr9:97648600-97651800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr9:97648600-97652000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr9:97648600-97653400	Weak transcription	Brain Hippocampus Middle	brain
14	chr9:97648600-97654600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr9:97648600-97654600	Weak transcription	Pancreas	Pancrea
16	chr9:97648600-97654800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr9:97648600-97656000	Weak transcription	Liver	Liver
18	chr9:97648800-97652600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr9:97648800-97652800	Weak transcription	Fetal Lung	lung
20	chr9:97648800-97653200	Weak transcription	HSMM	muscle
21	chr9:97650400-97654600	Weak transcription	Osteobl	bone
22	chr9:97650400-97655800	Weak transcription	Stomach Mucosa	stomach
23	chr9:97650600-97652800	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr9:97650600-97654200	ZNF genes & repeats	A549	lung
25	chr9:97650600-97656000	Weak transcription	NHLF	lung
26	chr9:97651000-97655400	Weak transcription	Hela-S3	cervix

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