Variant report

Variant	rs72750373
Chromosome Location	chr9:97758160-97758161
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:97755667..97758170-chr9:97809662..97811457,2	MCF-7	breast:
2	chr9:97755782..97758409-chr9:97857933..97859642,2	MCF-7	breast:
3	chr9:97548900..97551008-chr9:97756127..97758239,2	MCF-7	breast:
4	chr9:97391705..97394418-chr9:97757936..97760772,2	MCF-7	breast:
5	chr9:97757677..97760914-chr9:97764388..97768394,5	K562	blood:
6	chr9:97674046..97692471-chr9:97747275..97760115,80	MCF-7	breast:
7	chr9:97750325..97752541-chr9:97755985..97759047,3	K562	blood:
8	chr9:97543420..97548041-chr9:97751061..97760906,16	MCF-7	breast:
9	chr9:97674991..97691307-chr9:97751911..97773298,151	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000148120	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1020962	1.00[ASN][1000 genomes]
rs1038092	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10761371	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10993471	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12553869	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12555829	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1564235	1.00[ASN][1000 genomes]
rs1571896	1.00[ASN][1000 genomes]
rs1871220	1.00[ASN][1000 genomes]
rs1888944	1.00[ASN][1000 genomes]
rs1888945	1.00[ASN][1000 genomes]
rs1888946	1.00[ASN][1000 genomes]
rs2061798	1.00[ASN][1000 genomes]
rs2061801	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2306207	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3739748	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3780560	0.80[ASN][1000 genomes]
rs4743975	1.00[ASN][1000 genomes]
rs4743977	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4743978	1.00[ASN][1000 genomes]
rs4743989	0.80[ASN][1000 genomes]
rs4744421	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4744429	1.00[ASN][1000 genomes]
rs4744437	0.93[ASN][1000 genomes]
rs4744440	0.86[ASN][1000 genomes]
rs67134693	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7039768	1.00[ASN][1000 genomes]
rs7046900	0.93[ASN][1000 genomes]
rs72750335	0.96[ASN][1000 genomes]
rs72750346	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs72750351	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72750359	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72750367	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73540087	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9299427	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933919	chr9:97619512-97919344	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97670600-97766000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr9:97715000-97758200	Weak transcription	Spleen	Spleen
3	chr9:97736600-97766200	Weak transcription	Right Ventricle	heart
4	chr9:97737000-97758200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr9:97740200-97758200	Weak transcription	Placenta	Placenta
6	chr9:97741200-97758200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr9:97742600-97763200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr9:97743200-97759200	Weak transcription	Primary B cells from peripheral blood	blood
9	chr9:97743600-97758200	Weak transcription	Fetal Muscle Trunk	muscle
10	chr9:97744000-97758200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr9:97744200-97763200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr9:97744800-97758200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr9:97746000-97762000	Weak transcription	Duodenum Mucosa	Duodenum
14	chr9:97746200-97758200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr9:97746200-97758200	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr9:97747400-97759200	Weak transcription	Primary T cells from cord blood	blood
17	chr9:97748600-97758800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr9:97748600-97761800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr9:97748800-97758200	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr9:97750000-97762200	Weak transcription	Thymus	Thymus
21	chr9:97752800-97762200	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr9:97753600-97758600	Enhancers	Fetal Lung	lung
23	chr9:97754400-97759600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr9:97754600-97762400	Weak transcription	Primary hematopoietic stem cells	blood
25	chr9:97755200-97766400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr9:97756200-97765000	Weak transcription	Fetal Intestine Large	intestine
27	chr9:97756200-97765000	Weak transcription	Fetal Intestine Small	intestine
28	chr9:97756400-97759600	Enhancers	Ovary	ovary
29	chr9:97757000-97759200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr9:97757000-97759400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr9:97757200-97759000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr9:97757200-97759000	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr9:97757200-97759200	Enhancers	Muscle Satellite Cultured Cells	--
34	chr9:97757200-97759200	Enhancers	Fetal Kidney	kidney
35	chr9:97757200-97759400	Enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr9:97757200-97759400	Enhancers	Skeletal Muscle Male	skeletal muscle
37	chr9:97757200-97759400	Enhancers	HSMMtube	muscle
38	chr9:97757200-97759400	Enhancers	NH-A	brain
39	chr9:97757200-97759800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr9:97757400-97758200	Enhancers	Brain Angular Gyrus	brain
41	chr9:97757400-97758400	Enhancers	HSMM	muscle
42	chr9:97757400-97758800	Enhancers	Psoas Muscle	Psoas
43	chr9:97757400-97759000	Enhancers	Aorta	Aorta
44	chr9:97757400-97759000	Enhancers	Brain Anterior Caudate	brain
45	chr9:97757400-97759000	Enhancers	Brain Hippocampus Middle	brain
46	chr9:97757400-97759000	Enhancers	Fetal Muscle Leg	muscle
47	chr9:97757400-97759000	Enhancers	Left Ventricle	heart
48	chr9:97757400-97759000	Enhancers	NHLF	lung
49	chr9:97757400-97759400	Enhancers	Brain Inferior Temporal Lobe	brain
50	chr9:97757400-97759400	Enhancers	Fetal Stomach	stomach

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