Variant report

Variant	rs10821450
Chromosome Location	chr9:97865250-97865251
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:97684533..97687061-chr9:97864778..97867834,3	MCF-7	breast:
2	chr9:97767984..97771413-chr9:97863181..97865279,3	MCF-7	breast:
3	chr9:97677752..97679615-chr9:97863555..97866093,2	MCF-7	breast:
4	chr9:97765323..97769705-chr9:97862914..97866422,4	MCF-7	breast:
5	chr9:97865195..97867947-chr9:97877492..97879411,2	K562	blood:
6	chr9:97863709..97866154-chr9:97872282..97873839,2	MCF-7	breast:
7	chr9:97400366..97403518-chr9:97862496..97865550,3	MCF-7	breast:
8	chr9:97863799..97866898-chr9:97878535..97880902,4	MCF-7	breast:
9	chr9:97849931..97850617-chr9:97865009..97865810,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000148120	Chromatin interaction
ENSG00000165140	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1045276	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10491560	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10761375	0.82[EUR][1000 genomes]
rs10761376	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10821446	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs171417	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs356669	0.81[AMR][1000 genomes]
rs356673	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs356675	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs356679	0.81[AMR][1000 genomes]
rs356680	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs356682	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs356683	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs356684	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs356688	0.82[AMR][1000 genomes]
rs356689	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs437511	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs526189	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs540412	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs565293	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs609324	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs657637	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7023722	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7033633	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7034586	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7863582	0.94[EUR][1000 genomes]
rs7865753	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs944934	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933919	chr9:97619512-97919344	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases
2	nsv1038106	chr9:97793038-97881416	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
3	nsv1038523	chr9:97797032-97923774	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
4	nsv540175	chr9:97797032-97923774	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
5	nsv831656	chr9:97831551-97989980	Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97813000-97873000	Weak transcription	K562	blood
2	chr9:97820600-97875000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr9:97838000-97871200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr9:97844000-97898400	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr9:97846200-97880000	Weak transcription	Primary B cells from cord blood	blood
6	chr9:97847600-97878400	Weak transcription	Dnd41	blood
7	chr9:97855000-97867800	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr9:97855200-97876800	Weak transcription	GM12878-XiMat	blood
9	chr9:97855400-97865400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr9:97855400-97884800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr9:97855600-97865400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr9:97855600-97876400	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr9:97855600-97878600	Weak transcription	Stomach Mucosa	stomach
14	chr9:97856200-97872600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr9:97857800-97869600	Weak transcription	HUVEC	blood vessel
16	chr9:97858600-97867600	Genic enhancers	Fetal Muscle Leg	muscle
17	chr9:97858600-97877200	Strong transcription	Fetal Intestine Large	intestine
18	chr9:97858600-97878400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr9:97858800-97870800	Genic enhancers	Fetal Muscle Trunk	muscle
20	chr9:97859000-97865400	Genic enhancers	Skeletal Muscle Male	skeletal muscle
21	chr9:97859600-97865400	Strong transcription	Duodenum Mucosa	Duodenum
22	chr9:97860000-97875600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr9:97860200-97867000	Enhancers	Fetal Heart	heart
24	chr9:97860400-97867800	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr9:97860400-97879000	Strong transcription	Liver	Liver
26	chr9:97860600-97865400	Genic enhancers	Placenta	Placenta
27	chr9:97860600-97869000	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr9:97860600-97870200	Strong transcription	Thymus	Thymus
29	chr9:97861000-97865400	Strong transcription	Fetal Intestine Small	intestine
30	chr9:97861000-97865800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr9:97861000-97866200	Weak transcription	Primary B cells from peripheral blood	blood
32	chr9:97861000-97869000	Weak transcription	Fetal Thymus	thymus
33	chr9:97861200-97877200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr9:97861200-97889800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr9:97861600-97866800	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr9:97862000-97865600	Genic enhancers	Stomach Smooth Muscle	stomach
37	chr9:97862200-97865400	Strong transcription	HepG2	liver
38	chr9:97862200-97867200	Enhancers	Brain Substantia Nigra	brain
39	chr9:97862200-97870200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr9:97862600-97865400	Weak transcription	Adipose Nuclei	Adipose
41	chr9:97862600-97866000	Weak transcription	Aorta	Aorta
42	chr9:97862600-97869200	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr9:97862800-97865400	Strong transcription	A549	lung
44	chr9:97862800-97865800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr9:97862800-97866400	Enhancers	Cortex derived primary cultured neurospheres	brain
46	chr9:97862800-97874000	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr9:97863000-97865400	Weak transcription	NHDF-Ad	bronchial
48	chr9:97863000-97865600	Enhancers	HSMMtube	muscle
49	chr9:97863000-97866000	Enhancers	HMEC	breast
50	chr9:97863000-97867000	Genic enhancers	Fetal Stomach	stomach

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