Variant report

Variant	rs356688
Chromosome Location	chr9:97979839-97979840
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97979082..97980719-chr9:98030115..98031662,2	K562	blood:
2	chr9:97978768..97981223-chr9:97996398..97999269,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10821450	0.82[AMR][1000 genomes]
rs171417	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs184818	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs187172	0.87[AMR][1000 genomes]
rs356666	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs356669	0.91[AMR][1000 genomes]
rs356673	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs356675	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs356677	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs356678	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs356679	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs356680	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs356682	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs356683	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs356684	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs356687	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs356689	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs416792	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs437511	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs526189	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs540412	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs565293	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs609324	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs657637	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs944934	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831656	chr9:97831551-97989980	Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
2	nsv831657	chr9:97959274-98204769	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97962000-97980600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:97963000-97993400	Weak transcription	Hela-S3	cervix
3	chr9:97969800-97981200	Weak transcription	Fetal Stomach	stomach
4	chr9:97969800-97986400	Weak transcription	Fetal Intestine Small	intestine
5	chr9:97970200-97980800	Weak transcription	Fetal Intestine Large	intestine
6	chr9:97972000-97980800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr9:97973600-98024000	Weak transcription	Gastric	stomach
8	chr9:97973800-97981200	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr9:97974000-98009400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr9:97975200-97980400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr9:97975400-97984000	Weak transcription	Fetal Lung	lung
12	chr9:97977000-97981000	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr9:97977200-97981000	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr9:97978000-97980400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr9:97978000-97980800	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr9:97978000-97980800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr9:97978000-97981000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr9:97978000-98008400	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr9:97978200-97980400	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr9:97978200-97980400	Weak transcription	GM12878-XiMat	blood
21	chr9:97978200-97980600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr9:97978200-97982000	Weak transcription	Thymus	Thymus
23	chr9:97978200-97994400	Weak transcription	Primary T cells from cord blood	blood
24	chr9:97978400-97981000	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr9:97978600-97981600	Enhancers	Primary B cells from peripheral blood	blood
26	chr9:97979200-97980600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr9:97979800-97980200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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