Variant report

Variant	rs10821674
Chromosome Location	chr10:61864596-61864597
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:61860379..61863071-chr10:61864008..61865521,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10740007	0.93[ASN][1000 genomes]
rs10740008	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10761453	0.85[ASN][1000 genomes]
rs10761454	0.88[ASN][1000 genomes]
rs10821675	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10994194	0.85[ASN][1000 genomes]
rs10994195	0.85[ASN][1000 genomes]
rs10994200	0.96[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs10994206	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2393585	0.95[ASN][1000 genomes]
rs2393600	0.85[ASN][1000 genomes]
rs34577721	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3750800	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3793858	0.85[ASN][1000 genomes]
rs3793859	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7077937	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61792200-61883200	Weak transcription	Psoas Muscle	Psoas
2	chr10:61834000-61868000	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr10:61835400-61870000	Weak transcription	Fetal Muscle Leg	muscle
4	chr10:61835400-61883200	Weak transcription	Brain Cingulate Gyrus	brain
5	chr10:61835600-61874600	Weak transcription	Brain Anterior Caudate	brain
6	chr10:61835600-61883000	Weak transcription	Fetal Heart	heart
7	chr10:61835800-61866400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr10:61836000-61865200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr10:61836000-61874800	Weak transcription	HSMMtube	muscle
10	chr10:61836000-61881800	Weak transcription	Left Ventricle	heart
11	chr10:61836000-61893200	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr10:61836200-61870000	Weak transcription	Fetal Brain Female	brain
13	chr10:61836200-61870200	Weak transcription	Fetal Stomach	stomach
14	chr10:61839800-61876400	Weak transcription	Fetal Muscle Trunk	muscle
15	chr10:61841200-61899400	Weak transcription	Right Ventricle	heart
16	chr10:61843000-61864800	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr10:61843000-61868600	Weak transcription	Ovary	ovary
18	chr10:61846600-61864600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr10:61846600-61888600	Weak transcription	Fetal Kidney	kidney
20	chr10:61847000-61868200	Weak transcription	Primary T cells from cord blood	blood
21	chr10:61847200-61865600	Weak transcription	Aorta	Aorta
22	chr10:61848000-61874200	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr10:61848000-61900400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr10:61848200-61868000	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr10:61848200-61868200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr10:61848200-61874800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr10:61848400-61889800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr10:61849200-61865000	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr10:61849200-61882600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr10:61851800-61869000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr10:61857200-61882600	Weak transcription	NH-A	brain
32	chr10:61857400-61865200	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr10:61857400-61867200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr10:61857400-61889800	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr10:61857800-61889600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr10:61859800-61867800	Weak transcription	Fetal Intestine Small	intestine
37	chr10:61859800-61889800	Weak transcription	Duodenum Mucosa	Duodenum
38	chr10:61859800-61900200	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr10:61860000-61874800	Weak transcription	Brain Hippocampus Middle	brain
40	chr10:61860000-61875000	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr10:61860000-61900000	Weak transcription	Fetal Brain Male	brain
42	chr10:61860400-61874000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr10:61860600-61883400	Weak transcription	Brain Substantia Nigra	brain
44	chr10:61861400-61868800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr10:61861600-61866800	Strong transcription	Placenta	Placenta
46	chr10:61861600-61869200	Strong transcription	Skeletal Muscle Female	skeletal muscle
47	chr10:61861800-61867400	Weak transcription	A549	lung
48	chr10:61862200-61866400	Weak transcription	Liver	Liver
49	chr10:61863200-61865200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr10:61863200-61865800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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