Variant report

Variant	rs2393585
Chromosome Location	chr10:61868222-61868223
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:61866592..61868689-chr10:61930446..61933259,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10218875	1.00[CEU][hapmap];0.82[CHB][hapmap];0.98[EUR][1000 genomes]
rs10733758	0.91[EUR][1000 genomes]
rs10740007	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10740008	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10740009	1.00[CEU][hapmap];0.82[CHB][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10740010	0.99[EUR][1000 genomes]
rs10761453	0.89[JPT][hapmap];0.80[ASN][1000 genomes]
rs10761454	1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10761456	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10821674	0.95[ASN][1000 genomes]
rs10821675	0.80[CEU][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs10994194	0.89[JPT][hapmap];0.80[ASN][1000 genomes]
rs10994195	0.89[JPT][hapmap];0.80[ASN][1000 genomes]
rs10994200	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10994210	1.00[CEU][hapmap];0.82[CHB][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10994214	0.87[EUR][1000 genomes]
rs12146176	0.88[JPT][hapmap]
rs12761450	0.87[EUR][1000 genomes]
rs12761506	0.87[EUR][1000 genomes]
rs12779035	0.82[CHB][hapmap]
rs2393600	0.80[ASN][1000 genomes]
rs2393611	0.98[EUR][1000 genomes]
rs34577721	0.87[ASN][1000 genomes]
rs3750800	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs3793858	0.80[ASN][1000 genomes]
rs3793859	0.82[CHB][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs4948389	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4948390	0.88[EUR][1000 genomes]
rs7077937	0.89[JPT][hapmap]

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61792200-61883200	Weak transcription	Psoas Muscle	Psoas
2	chr10:61835400-61870000	Weak transcription	Fetal Muscle Leg	muscle
3	chr10:61835400-61883200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr10:61835600-61874600	Weak transcription	Brain Anterior Caudate	brain
5	chr10:61835600-61883000	Weak transcription	Fetal Heart	heart
6	chr10:61836000-61874800	Weak transcription	HSMMtube	muscle
7	chr10:61836000-61881800	Weak transcription	Left Ventricle	heart
8	chr10:61836000-61893200	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr10:61836200-61870000	Weak transcription	Fetal Brain Female	brain
10	chr10:61836200-61870200	Weak transcription	Fetal Stomach	stomach
11	chr10:61839800-61876400	Weak transcription	Fetal Muscle Trunk	muscle
12	chr10:61841200-61899400	Weak transcription	Right Ventricle	heart
13	chr10:61843000-61868600	Weak transcription	Ovary	ovary
14	chr10:61846600-61888600	Weak transcription	Fetal Kidney	kidney
15	chr10:61848000-61874200	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr10:61848000-61900400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr10:61848200-61874800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr10:61848400-61889800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr10:61849200-61882600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr10:61851800-61869000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr10:61857200-61882600	Weak transcription	NH-A	brain
22	chr10:61857400-61889800	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr10:61857800-61889600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr10:61859800-61889800	Weak transcription	Duodenum Mucosa	Duodenum
25	chr10:61859800-61900200	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr10:61860000-61874800	Weak transcription	Brain Hippocampus Middle	brain
27	chr10:61860000-61875000	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr10:61860000-61900000	Weak transcription	Fetal Brain Male	brain
29	chr10:61860400-61874000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr10:61860600-61883400	Weak transcription	Brain Substantia Nigra	brain
31	chr10:61861400-61868800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr10:61861600-61869200	Strong transcription	Skeletal Muscle Female	skeletal muscle
33	chr10:61863200-61869200	Strong transcription	Primary T helper cells fromperipheralblood	blood
34	chr10:61863600-61874800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr10:61863800-61883400	Weak transcription	Brain Angular Gyrus	brain
36	chr10:61864600-61874800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr10:61865200-61868400	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr10:61865200-61874600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr10:61865400-61870800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
40	chr10:61865400-61874600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr10:61865800-61876400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr10:61866000-61868600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr10:61866000-61874200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr10:61866400-61874400	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr10:61866400-61889800	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr10:61867000-61910200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr10:61867200-61868800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr10:61867600-61891200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr10:61867800-61868600	Enhancers	Liver	Liver
50	chr10:61868000-61868600	Strong transcription	Skeletal Muscle Male	skeletal muscle

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