Variant report

Variant	rs12146176
Chromosome Location	chr10:61850249-61850250
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:61849562..61851308-chr10:61852890..61855410,2	K562	blood:
2	chr10:61848786..61851062-chr10:61852839..61855410,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10218875	0.86[JPT][hapmap]
rs10740008	0.88[JPT][hapmap]
rs10740009	0.86[JPT][hapmap]
rs10761452	0.92[CEU][hapmap];0.88[JPT][hapmap];0.94[EUR][1000 genomes]
rs10761453	0.84[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10761454	0.88[JPT][hapmap]
rs10821671	0.88[CEU][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10994194	0.84[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10994195	0.84[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10994210	0.86[JPT][hapmap]
rs11596260	0.92[CEU][hapmap];0.88[JPT][hapmap];0.94[EUR][1000 genomes]
rs12779035	0.86[JPT][hapmap]
rs2241540	0.92[CEU][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2393585	0.88[JPT][hapmap]
rs3750800	0.88[JPT][hapmap]
rs3793858	0.86[JPT][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3793859	0.84[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs7077937	1.00[JPT][hapmap]

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61792200-61883200	Weak transcription	Psoas Muscle	Psoas
2	chr10:61805600-61859800	Weak transcription	Brain Substantia Nigra	brain
3	chr10:61817400-61857000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr10:61819600-61860200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr10:61824200-61856800	Weak transcription	NH-A	brain
6	chr10:61828400-61859800	Weak transcription	Fetal Brain Male	brain
7	chr10:61830000-61851600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr10:61834000-61868000	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr10:61835000-61859600	Weak transcription	Brain Angular Gyrus	brain
10	chr10:61835400-61870000	Weak transcription	Fetal Muscle Leg	muscle
11	chr10:61835400-61883200	Weak transcription	Brain Cingulate Gyrus	brain
12	chr10:61835600-61874600	Weak transcription	Brain Anterior Caudate	brain
13	chr10:61835600-61883000	Weak transcription	Fetal Heart	heart
14	chr10:61835800-61866400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr10:61836000-61865200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr10:61836000-61874800	Weak transcription	HSMMtube	muscle
17	chr10:61836000-61881800	Weak transcription	Left Ventricle	heart
18	chr10:61836000-61893200	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr10:61836200-61850800	Weak transcription	Esophagus	oesophagus
20	chr10:61836200-61851000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr10:61836200-61853400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr10:61836200-61864400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr10:61836200-61870000	Weak transcription	Fetal Brain Female	brain
24	chr10:61836200-61870200	Weak transcription	Fetal Stomach	stomach
25	chr10:61838800-61864000	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr10:61839800-61859000	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr10:61839800-61876400	Weak transcription	Fetal Muscle Trunk	muscle
28	chr10:61840800-61858200	Weak transcription	Colonic Mucosa	Colon
29	chr10:61841200-61899400	Weak transcription	Right Ventricle	heart
30	chr10:61842800-61856800	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr10:61843000-61856800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr10:61843000-61864800	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr10:61843000-61868600	Weak transcription	Ovary	ovary
34	chr10:61846400-61853000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr10:61846400-61854800	Weak transcription	Liver	Liver
36	chr10:61846600-61856800	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr10:61846600-61864400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr10:61846600-61864600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr10:61846600-61888600	Weak transcription	Fetal Kidney	kidney
40	chr10:61846800-61856800	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr10:61847000-61863000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr10:61847000-61868200	Weak transcription	Primary T cells from cord blood	blood
43	chr10:61847200-61861600	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr10:61847200-61865600	Weak transcription	Aorta	Aorta
45	chr10:61848000-61852800	Weak transcription	GM12878-XiMat	blood
46	chr10:61848000-61856600	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr10:61848000-61856800	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr10:61848000-61863200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr10:61848000-61874200	Weak transcription	Primary T cells fromperipheralblood	blood
50	chr10:61848000-61900400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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