Variant report

Variant	rs10761452
Chromosome Location	chr10:61847681-61847682
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10218875	0.88[JPT][hapmap]
rs10740008	0.89[JPT][hapmap]
rs10761453	0.84[CEU][hapmap];0.89[JPT][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10821671	0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10994194	0.84[CEU][hapmap];0.89[JPT][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10994195	0.84[CEU][hapmap];0.89[JPT][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10994210	0.88[JPT][hapmap]
rs11596260	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.88[YRI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12146176	0.92[CEU][hapmap];0.88[JPT][hapmap];0.94[EUR][1000 genomes]
rs12779035	0.88[JPT][hapmap]
rs2241540	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3750800	0.89[JPT][hapmap]
rs3793858	0.86[EUR][1000 genomes]
rs3793859	0.84[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs7077937	1.00[JPT][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10761452	KCNA1	trans	brain	seeQTL

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61791800-61849000	Weak transcription	Pancreas	Pancrea
2	chr10:61792200-61883200	Weak transcription	Psoas Muscle	Psoas
3	chr10:61805600-61859800	Weak transcription	Brain Substantia Nigra	brain
4	chr10:61806000-61847800	Weak transcription	Fetal Lung	lung
5	chr10:61814400-61848800	Weak transcription	Gastric	stomach
6	chr10:61817400-61857000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr10:61818200-61848000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr10:61819600-61860200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr10:61824200-61856800	Weak transcription	NH-A	brain
10	chr10:61825000-61849000	Weak transcription	Rectal Smooth Muscle	rectum
11	chr10:61828400-61859800	Weak transcription	Fetal Brain Male	brain
12	chr10:61829200-61847800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr10:61830000-61851600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr10:61831000-61849200	Strong transcription	Primary T helper cells fromperipheralblood	blood
15	chr10:61832800-61848600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr10:61834000-61868000	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr10:61835000-61859600	Weak transcription	Brain Angular Gyrus	brain
18	chr10:61835400-61870000	Weak transcription	Fetal Muscle Leg	muscle
19	chr10:61835400-61883200	Weak transcription	Brain Cingulate Gyrus	brain
20	chr10:61835600-61848600	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr10:61835600-61874600	Weak transcription	Brain Anterior Caudate	brain
22	chr10:61835600-61883000	Weak transcription	Fetal Heart	heart
23	chr10:61835800-61866400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr10:61836000-61865200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr10:61836000-61874800	Weak transcription	HSMMtube	muscle
26	chr10:61836000-61881800	Weak transcription	Left Ventricle	heart
27	chr10:61836000-61893200	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr10:61836200-61847800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr10:61836200-61847800	Weak transcription	Fetal Intestine Small	intestine
30	chr10:61836200-61850000	Weak transcription	Brain Hippocampus Middle	brain
31	chr10:61836200-61850800	Weak transcription	Esophagus	oesophagus
32	chr10:61836200-61851000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr10:61836200-61853400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr10:61836200-61864400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr10:61836200-61870000	Weak transcription	Fetal Brain Female	brain
36	chr10:61836200-61870200	Weak transcription	Fetal Stomach	stomach
37	chr10:61837200-61849400	Strong transcription	Placenta	Placenta
38	chr10:61838200-61848000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr10:61838800-61848800	Weak transcription	Small Intestine	intestine
40	chr10:61838800-61864000	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr10:61839800-61859000	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr10:61839800-61876400	Weak transcription	Fetal Muscle Trunk	muscle
43	chr10:61840800-61858200	Weak transcription	Colonic Mucosa	Colon
44	chr10:61841200-61899400	Weak transcription	Right Ventricle	heart
45	chr10:61842800-61856800	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr10:61843000-61856800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr10:61843000-61864800	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr10:61843000-61868600	Weak transcription	Ovary	ovary
49	chr10:61844800-61848200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr10:61844800-61848600	Strong transcription	Fetal Intestine Large	intestine

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