Variant report

Variant	rs10821671
Chromosome Location	chr10:61848789-61848790
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr10:61848760-61849362	HCT-116	colon:	n/a	chr10:61849052-61849059 chr10:61849052-61849060
2	ZMIZ1	chr10:61848786-61848858	K562	blood:	n/a	n/a
3	FOSL1	chr10:61848680-61849347	HCT-116	colon:	n/a	chr10:61849052-61849059 chr10:61849052-61849060
4	POLR2A	chr10:61848587-61849177	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:61848786..61851062-chr10:61852839..61855410,2	K562	blood:
2	chr10:61843596..61845138-chr10:61847777..61849386,2	K562	blood:

Variant related genes	Relation type
ANK3	TF binding region
ENSG00000151150	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10218875	0.88[JPT][hapmap]
rs10740008	0.89[JPT][hapmap]
rs10761452	0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10761453	0.88[CEU][hapmap];0.89[JPT][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10994194	0.88[CEU][hapmap];0.89[JPT][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10994195	0.88[CEU][hapmap];0.89[JPT][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10994210	0.88[JPT][hapmap]
rs11596260	0.96[CEU][hapmap];0.82[CHB][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12146176	0.88[CEU][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12779035	0.88[JPT][hapmap]
rs2241540	0.96[CEU][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3750800	0.89[JPT][hapmap]
rs3793858	0.83[CEU][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3793859	0.88[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs7077937	1.00[JPT][hapmap]

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61791800-61849000	Weak transcription	Pancreas	Pancrea
2	chr10:61792200-61883200	Weak transcription	Psoas Muscle	Psoas
3	chr10:61805600-61859800	Weak transcription	Brain Substantia Nigra	brain
4	chr10:61814400-61848800	Weak transcription	Gastric	stomach
5	chr10:61817400-61857000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr10:61819600-61860200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr10:61824200-61856800	Weak transcription	NH-A	brain
8	chr10:61825000-61849000	Weak transcription	Rectal Smooth Muscle	rectum
9	chr10:61828400-61859800	Weak transcription	Fetal Brain Male	brain
10	chr10:61830000-61851600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr10:61831000-61849200	Strong transcription	Primary T helper cells fromperipheralblood	blood
12	chr10:61834000-61868000	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr10:61835000-61859600	Weak transcription	Brain Angular Gyrus	brain
14	chr10:61835400-61870000	Weak transcription	Fetal Muscle Leg	muscle
15	chr10:61835400-61883200	Weak transcription	Brain Cingulate Gyrus	brain
16	chr10:61835600-61874600	Weak transcription	Brain Anterior Caudate	brain
17	chr10:61835600-61883000	Weak transcription	Fetal Heart	heart
18	chr10:61835800-61866400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr10:61836000-61865200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr10:61836000-61874800	Weak transcription	HSMMtube	muscle
21	chr10:61836000-61881800	Weak transcription	Left Ventricle	heart
22	chr10:61836000-61893200	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr10:61836200-61850000	Weak transcription	Brain Hippocampus Middle	brain
24	chr10:61836200-61850800	Weak transcription	Esophagus	oesophagus
25	chr10:61836200-61851000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr10:61836200-61853400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr10:61836200-61864400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr10:61836200-61870000	Weak transcription	Fetal Brain Female	brain
29	chr10:61836200-61870200	Weak transcription	Fetal Stomach	stomach
30	chr10:61837200-61849400	Strong transcription	Placenta	Placenta
31	chr10:61838800-61848800	Weak transcription	Small Intestine	intestine
32	chr10:61838800-61864000	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr10:61839800-61859000	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr10:61839800-61876400	Weak transcription	Fetal Muscle Trunk	muscle
35	chr10:61840800-61858200	Weak transcription	Colonic Mucosa	Colon
36	chr10:61841200-61899400	Weak transcription	Right Ventricle	heart
37	chr10:61842800-61856800	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr10:61843000-61856800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr10:61843000-61864800	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr10:61843000-61868600	Weak transcription	Ovary	ovary
41	chr10:61846400-61853000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr10:61846400-61854800	Weak transcription	Liver	Liver
43	chr10:61846600-61848800	Weak transcription	Duodenum Mucosa	Duodenum
44	chr10:61846600-61848800	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr10:61846600-61856800	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr10:61846600-61864400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr10:61846600-61864600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr10:61846600-61888600	Weak transcription	Fetal Kidney	kidney
49	chr10:61846800-61856800	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr10:61847000-61863000	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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