Variant report

Variant	rs10825214
Chromosome Location	chr10:55827258-55827259
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10763044	0.93[JPT][hapmap]
rs10763052	0.87[JPT][hapmap]
rs10763053	0.93[JPT][hapmap]
rs10763054	0.87[JPT][hapmap]
rs10763057	0.87[JPT][hapmap]
rs10825194	0.94[JPT][hapmap]
rs10825195	0.87[JPT][hapmap]
rs10825219	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs11004040	1.00[CEU][hapmap]
rs11004054	0.81[EUR][1000 genomes]
rs12415233	1.00[CEU][hapmap]
rs16937890	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs61858409	0.87[EUR][1000 genomes]
rs7082950	0.94[JPT][hapmap]
rs7912972	0.93[JPT][hapmap]
rs9645506	0.94[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv869303	chr10:55714219-55857931	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv8667	chr10:55803106-56022647	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv428557	chr10:55815334-55988225	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv870252	chr10:55823123-56029435	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55826400-55828200	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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