Variant report

Variant	rs10825194
Chromosome Location	chr10:55790580-55790581
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10763044	0.96[CEU][hapmap];0.93[CHB][hapmap];0.87[JPT][hapmap]
rs10763052	0.96[CEU][hapmap];0.93[CHB][hapmap];0.80[JPT][hapmap]
rs10763053	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10763054	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs10763057	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs10763065	0.92[CEU][hapmap]
rs10825195	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[YRI][hapmap]
rs10825207	0.92[CEU][hapmap]
rs10825214	0.94[JPT][hapmap]
rs1911415	0.80[CEU][hapmap]
rs7082950	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs718309	0.92[CEU][hapmap]
rs7912972	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9645506	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv869303	chr10:55714219-55857931	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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