Variant report
| Variant | rs10763065 |
|---|---|
| Chromosome Location | chr10:55836349-55836350 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs10763044 | 0.81[CEU][hapmap] |
| rs10763052 | 0.81[CEU][hapmap] |
| rs10763053 | 0.85[CEU][hapmap];0.86[GIH][hapmap] |
| rs10763054 | 0.88[CEU][hapmap] |
| rs10763057 | 0.92[CEU][hapmap] |
| rs10763064 | 0.81[CEU][hapmap] |
| rs10825194 | 0.92[CEU][hapmap] |
| rs10825195 | 0.91[CEU][hapmap] |
| rs10825207 | 0.96[CEU][hapmap];0.86[GIH][hapmap];0.85[TSI][hapmap] |
| rs10825211 | 0.80[CEU][hapmap] |
| rs10825218 | 0.82[JPT][hapmap];0.81[LWK][hapmap];0.83[YRI][hapmap] |
| rs11004025 | 0.81[CEU][hapmap] |
| rs11004048 | 0.86[ASN][1000 genomes] |
| rs1911381 | 0.81[CEU][hapmap] |
| rs1911382 | 0.81[CEU][hapmap] |
| rs1911383 | 0.81[CEU][hapmap] |
| rs1911384 | 0.81[CEU][hapmap] |
| rs1911415 | 0.88[CEU][hapmap] |
| rs2135716 | 0.81[CEU][hapmap] |
| rs2221567 | 0.80[CEU][hapmap] |
| rs4266979 | 0.87[CEU][hapmap] |
| rs4282900 | 0.88[CEU][hapmap] |
| rs4418714 | 0.81[CEU][hapmap] |
| rs4418715 | 0.81[CEU][hapmap] |
| rs4615929 | 0.81[CEU][hapmap] |
| rs4935495 | 0.81[CEU][hapmap] |
| rs7076822 | 0.81[CEU][hapmap] |
| rs7079133 | 0.84[CEU][hapmap] |
| rs7082950 | 0.88[CEU][hapmap] |
| rs7893675 | 0.84[CEU][hapmap] |
| rs7912972 | 0.85[CEU][hapmap] |
| rs7917052 | 0.88[CEU][hapmap] |
| rs9645506 | 0.95[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949692 | chr10:55502542-55893206 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv869303 | chr10:55714219-55857931 | ZNF genes & repeats Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv8667 | chr10:55803106-56022647 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv428557 | chr10:55815334-55988225 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | nsv870252 | chr10:55823123-56029435 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
mRNA abundance (count:3)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs10763065 | A1CF | cis | parietal | SCAN |
| rs10763065 | GPR135 | trans | cerebellum | SCAN |
| rs10763065 | MSMB | cis | parietal | SCAN |
Chromatin state (count:0 , 50 per page) page:
| No data |
