Variant report
| Variant | rs2221567 |
|---|---|
| Chromosome Location | chr10:55825695-55825696 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10763064 | 0.82[CEU][hapmap] |
| rs10763065 | 0.80[CEU][hapmap] |
| rs10825207 | 0.81[CEU][hapmap] |
| rs10825211 | 0.82[CEU][hapmap] |
| rs11004025 | 0.82[CEU][hapmap] |
| rs11004049 | 0.82[JPT][hapmap] |
| rs11004051 | 0.82[JPT][hapmap] |
| rs16937881 | 0.82[JPT][hapmap] |
| rs1911381 | 0.82[CEU][hapmap] |
| rs1911382 | 0.82[CEU][hapmap] |
| rs1911383 | 0.82[CEU][hapmap] |
| rs1911384 | 0.82[CEU][hapmap] |
| rs1911415 | 0.92[CEU][hapmap];0.82[JPT][hapmap] |
| rs2135716 | 0.82[CEU][hapmap] |
| rs2384373 | 0.85[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs4266979 | 0.95[CEU][hapmap];0.82[JPT][hapmap] |
| rs4282900 | 0.92[CEU][hapmap] |
| rs4418714 | 0.82[CEU][hapmap] |
| rs4418715 | 0.82[CEU][hapmap] |
| rs4615929 | 0.82[CEU][hapmap] |
| rs4935495 | 0.82[CEU][hapmap] |
| rs7076822 | 0.82[CEU][hapmap] |
| rs7079133 | 0.88[CEU][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs7893675 | 0.89[CEU][hapmap] |
| rs7917052 | 0.92[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949692 | chr10:55502542-55893206 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv869303 | chr10:55714219-55857931 | ZNF genes & repeats Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv8667 | chr10:55803106-56022647 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv428557 | chr10:55815334-55988225 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | nsv870252 | chr10:55823123-56029435 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs2221567 | A1CF | cis | parietal | SCAN |
Chromatin state (count:0 , 50 per page) page:
| No data |
