Variant report

Variant	rs1911415
Chromosome Location	chr10:55831016-55831017
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10763057	0.80[CEU][hapmap]
rs10763065	0.88[CEU][hapmap]
rs10825194	0.80[CEU][hapmap]
rs10825207	0.89[CEU][hapmap]
rs10825228	0.94[CHB][hapmap];0.89[CHD][hapmap];0.84[GIH][hapmap];0.86[MEX][hapmap];0.84[MKK][hapmap];0.89[YRI][hapmap]
rs11004049	0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11004050	0.94[CHB][hapmap];0.89[CHD][hapmap];0.90[JPT][hapmap];0.90[MEX][hapmap];0.84[MKK][hapmap];0.94[YRI][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11004051	0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11004062	0.89[CHB][hapmap];0.89[YRI][hapmap]
rs16937871	0.80[JPT][hapmap]
rs16937881	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs1911424	0.89[CHB][hapmap];0.82[CHD][hapmap];0.84[GIH][hapmap];0.86[MEX][hapmap];0.81[MKK][hapmap];0.89[YRI][hapmap]
rs1911425	0.88[CHB][hapmap];0.89[CHD][hapmap];0.81[GIH][hapmap];0.81[MKK][hapmap];0.94[YRI][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2221567	0.92[CEU][hapmap];0.82[JPT][hapmap]
rs35384087	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs35647814	0.92[ASN][1000 genomes]
rs4266979	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs4282900	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[YRI][hapmap]
rs7079133	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.91[GIH][hapmap];0.90[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7893675	0.96[CEU][hapmap];1.00[CHB][hapmap];0.88[YRI][hapmap]
rs7917052	1.00[CEU][hapmap]
rs9645506	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv869303	chr10:55714219-55857931	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv8667	chr10:55803106-56022647	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv428557	chr10:55815334-55988225	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv870252	chr10:55823123-56029435	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1911415	MSMB	cis	parietal	SCAN
rs1911415	A1CF	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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