Variant report
| Variant | rs7079133 |
|---|---|
| Chromosome Location | chr10:55822435-55822436 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10763065 | 0.84[CEU][hapmap] |
| rs10825207 | 0.85[CEU][hapmap] |
| rs10825228 | 0.93[CHB][hapmap];0.80[GIH][hapmap] |
| rs11004049 | 0.93[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs11004050 | 0.93[CHB][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs11004051 | 0.93[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs11004062 | 0.87[CHB][hapmap] |
| rs16937870 | 0.88[JPT][hapmap] |
| rs16937871 | 0.90[JPT][hapmap] |
| rs16937881 | 0.90[JPT][hapmap] |
| rs1911415 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.91[GIH][hapmap];0.90[JPT][hapmap] |
| rs1911424 | 0.87[CHB][hapmap];0.80[GIH][hapmap] |
| rs1911425 | 0.85[CHB][hapmap] |
| rs2221567 | 0.88[CEU][hapmap] |
| rs2384373 | 0.83[EUR][1000 genomes] |
| rs35384087 | 0.88[ASN][1000 genomes] |
| rs35647814 | 0.88[ASN][1000 genomes] |
| rs4266979 | 0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap] |
| rs4282900 | 0.96[CEU][hapmap];1.00[CHB][hapmap] |
| rs7893675 | 0.92[CEU][hapmap];1.00[CHB][hapmap] |
| rs7917052 | 0.96[CEU][hapmap];0.92[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949692 | chr10:55502542-55893206 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv869303 | chr10:55714219-55857931 | ZNF genes & repeats Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv8667 | chr10:55803106-56022647 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv428557 | chr10:55815334-55988225 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:55822400-55823400 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
